Detail Information

Basic Information:


  VIRBase ID:  

VHID00228692

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US5-2-3p:           ST13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US5-2-3p ST13
miRBase
Accession/Entrez ID		 MIMAT0001580 6767
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - AAG2//FAM10A1//FAM10A4//HIP//HOP//HSPABP//HSPABP1//P48//PRO0786//SNC6

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ST13
chr22:41244029(-) A-I      intronic
chr22:41251371(-) A-I      intronic
chr22:41233879(-) A-I      intronic
chr22:41233910(-) A-I      intronic
chr22:41244533(-) A-I      intronic
chr22:41244554(-) A-I      intronic
chr22:41243885(-) A-I      intronic
chr22:41251203(-) A-I      intronic
chr22:41251215(-) A-I      intronic
chr22:41251304(-) A-I      intronic
chr22:41251305(-) A-I      intronic
chr22:41251439(-) A-I      intronic
chr22:41229767(-) A-I      intronic
chr22:41227959(-) A-I      intronic
chr22:41228104(-) A-I      intronic
chr22:41228131(-) A-I      intronic
chr22:41242122(-) A-I      intronic
chr22:41223610(-) A-I      intronic
chr22:41229775(-) A-I      intronic
chr22:41230220(-) A-I      intronic
chr22:41230226(-) A-I      intronic
chr22:41230232(-) A-I      intronic
chr22:41242105(-) A-I      intronic
chr22:41242091(-) A-I      intronic
chr22:41242009(-) A-I      intronic
chr22:41241998(-) A-I      intronic
chr22:41237574(-) A-I      intronic
chr22:41237535(-) A-I      intronic
chr22:41242116(-) A-I      intronic
chr22:41232922(-) A-I      intronic
chr22:41232944(-) A-I      intronic
chr22:41242172(-) A-I      intronic
chr22:41233528(-) A-I      intronic
chr22:41237374(-) A-I      intronic
chr22:41242219(-) A-I      intronic
chr22:41243334(-) A-I      intronic
chr22:41223580(-) A-I      intronic
chr22:41233878(-) A-I      intronic
chr22:41243859(-) A-I      intronic
chr22:41247915(-) A-I      intronic
chr22:41233611(-) A-I      intronic
chr22:41233932(-) A-I      intronic
chr22:41247882(-) A-I      intronic
chr22:41233728(-) A-I      intronic
chr22:41236029(-) A-I      intronic
chr22:41223620(-) A-I      intronic
chr22:41242019(-) A-I      intronic
chr22:41244007(-) A-I      intronic
chr22:41243374(-) A-I      intronic
chr22:41243896(-) A-I      intronic
chr22:41237823(-) A-I      intronic
chr22:41242212(-) A-I      intronic
chr22:41247842(-) A-I      intronic
chr22:41234655(-) A-I      intronic
chr22:41237514(-) A-I      intronic
chr22:41223800(-) A-I      intronic
chr22:41233028(-) A-I      intronic
chr22:41243346(-) A-I      intronic
chr22:41233724(-) A-I      intronic
chr22:41223549(-) A-I      intronic
chr22:41233538(-) A-I      intronic
chr22:41251370(-) A-I      intronic
chr22:41233712(-) A-I      intronic
chr22:41223613(-) A-I      intronic
chr22:41234594(-) A-I      intronic
chr22:41237870(-) A-I      intronic
chr22:41243989(-) A-I      intronic
chr22:41243801(-) A-I      intronic
chr22:41223781(-) A-I      intronic
chr22:41233870(-) A-I      intronic
chr22:41243894(-) A-I      intronic
chr22:41241442(-) A-I      intronic
chr22:41237279(-) A-I      intronic
chr22:41233803(-) A-I      intronic
chr22:41239080(-) A-I      intronic
chr22:41243929(-) A-I      intronic
chr22:41237314(-) A-I      intronic
chr22:41233884(-) A-I      intronic
chr22:41237869(-) A-I      intronic
chr22:41243884(-) A-I      intronic
chr22:41234548(-) A-I      intronic
chr22:41247846(-) A-I      intronic
chr22:41232974(-) A-I      intronic
chr22:41234514(-) A-I      intronic
chr22:41235606(-) A-I      intronic
chr22:41232948(-) A-I      intronic
chr22:41243808(-) A-I      intronic
chr22:41223751(-) A-I      intronic
chr22:41239002(-) A-I      intronic
chr22:41233819(-) A-I      intronic
chr22:41237839(-) A-I      intronic
chr22:41244004(-) A-I      intronic
chr22:41242196(-) A-I      intronic
chr22:41240024(-) A-I      intronic
chr22:41237343(-) A-I      intronic
chr22:41227962(-) A-I      intronic
chr22:41240047(-) A-I      intronic
chr22:41232265(-) A-I      intronic
chr22:41233856(-) A-I      intronic
chr22:41233934(-) A-I      intronic
chr22:41239041(-) A-I      intronic
chr22:41242119(-) A-I      intronic
chr22:41239029(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ST13
chr22:41223788(-) A-G intron -    22484847
chr22:41245240(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ST13
chr22:41220903-41220904(-) Y 3'UTR       25219674//26075521
chr22:41221243-41221244(-) m6A 3'UTR       27773535
chr22:41221253-41221254(-) m6A 3'UTR       27773535
chr22:41221323-41221324(-) m6A 3'UTR       27773535
chr22:41223144-41223145(-) m6A CDS       -
chr22:41226942-41226943(-) m6A 3'UTR//CDS//exon//intron       24981863//28052920//27773535
chr22:41228189-41228190(-) m6A 3'UTR//intron       27773535
chr22:41231632-41231633(-) m6A 3'UTR//CDS//exon       27773535
chr22:41231719-41231720(-) m6A exon//intron       27773535
chr22:41231792-41231793(-) m6A exon//intron       27773535
chr22:41231799-41231800(-) m6A exon//intron       27773535
chr22:41231886-41231887(-) m6A 3'UTR//CDS//exon       27773535
chr22:41231949-41231950(-) m6A exon//intron       24981863//27773535
chr22:41240882-41240883(-) m6A 3'UTR//5'UTR//CDS       24981863//28052920//27773535//22575960
chr22:41240887-41240888(-) m6A 3'UTR//5'UTR//CDS       24981863//28052920//27773535//22575960
chr22:41244322-41244323(-) m6A 5'UTR//CDS//intron       24981863//28052920//27773535//22575960
chr22:41244338-41244339(-) m6A 5'UTR//CDS//intron       24981863//27773535//22575960
chr22:41244364-41244365(-) m6A 5'UTR//CDS//intron       24981863//27773535//22575960
chr22:41252539-41252540(-) m6A 5'UTR//CDS       22575960
chr22:41252586-41252587(-) m6A 5'UTR       24981863//22575960
chr22:41252692-41252693(-) m6A 5'UTR       24284625//24981863
chr22:41252707-41252708(-) m6A 5'UTR       24981863
chr22:41252781-41252782(-) m6A 5'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ST13
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US5-2-3p
Interactor2: ST13

Evidence Support:


Prediction-Evidence cRep//miRanda//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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