Basic Information:

  VIRBase ID:  

VHID00228189

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US5-2-3p:  MIMAT0001580          ANGPT1:  NM_001199859     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US5-2-3p	ANGPT1
miRBase Accession/Entrez ID	MIMAT0001580	284
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AGP1//AGPT//ANG1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ANGPT1	chr8:108408950(-) A-I      intronic chr8:108408969(-) A-I      intronic chr8:108269236(-) A-I      intronic chr8:108408970(-) A-I      intronic chr8:108293987(-) A-I      intronic chr8:108292580(-) A-I      intronic chr8:108269223(-) A-I      intronic chr8:108325806(-) A-I      intronic chr8:108325832(-) A-I      intronic chr8:108408784(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ANGPT1	chr8:108262014-108262015(-) m6A 3'UTR       27773535 chr8:108262029-108262030(-) m6A 3'UTR       27773535 chr8:108263291-108263292(-) m6A 3'UTR       27773535 chr8:108263331-108263332(-) m6A 3'UTR       24981863//27773535 chr8:108263362-108263363(-) m6A 3'UTR       24981863//27773535 chr8:108263412-108263413(-) m6A 3'UTR       24981863//27773535 chr8:108263432-108263433(-) m6A 3'UTR       24981863//27773535 chr8:108263446-108263447(-) m6A 3'UTR       24981863//27773535 chr8:108263574-108263575(-) m6A 3'UTR       27773535 chr8:108263621-108263622(-) m6A 3'UTR       27773535 chr8:108263687-108263688(-) m6A 3'UTR       24981863//27773535 chr8:108263731-108263732(-) m6A 3'UTR       24981863//27773535 chr8:108263773-108263774(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr8:108263786-108263787(-) m6A 3'UTR//exon       24209618//24981863//27773535//22575960 chr8:108263797-108263798(-) m6A 3'UTR//exon       24209618//24981863//27773535//22575960 chr8:108263821-108263822(-) m6A 3'UTR//exon       24209618//24981863//27773535//22575960 chr8:108263856-108263857(-) m6A 3'UTR//exon       24209618//24981863//27773535//22575960 chr8:108263993-108263994(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr8:108264006-108264007(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr8:108264017-108264018(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr8:108264169-108264170(-) m6A CDS//exon       24209618//24981863//27773535 chr8:108264179-108264180(-) m6A CDS//exon       24981863//27773535 chr8:108264184-108264185(-) m6A CDS//exon       24981863//27773535 chr8:108315549-108315550(-) m6A CDS//exon//intron       27773535 chr8:108315560-108315561(-) m6A CDS//exon//intron       27773535 chr8:108334164-108334165(-) m6A CDS//exon       27773535 chr8:108334218-108334219(-) m6A CDS//exon       27773535 chr8:108334252-108334253(-) m6A CDS       27773535 chr8:108334278-108334279(-) m6A CDS       27773535 chr8:108334302-108334303(-) m6A CDS       24981863//27773535 chr8:108334319-108334320(-) m6A CDS       24981863//27773535 chr8:108334346-108334347(-) m6A 5'UTR//CDS       24981863//27773535 chr8:108348380-108348381(-) m6A 5'UTR//CDS       27773535 chr8:108348411-108348412(-) m6A 5'UTR//CDS       27773535 chr8:108348486-108348487(-) m6A 5'UTR//CDS       24209618//27773535 chr8:108509994-108509995(-) m6A 5'UTR       - chr8:108510047-108510048(-) m6A 5'UTR       - chr8:108510169-108510170(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ANGPT1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US5-2-3p
Interactor2: ANGPT1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg