Basic Information:

  VIRBase ID:  

VHID00227753

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US5-1:  MIMAT0001579          CSMD2:  NM_052896     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US5-1	CSMD2
miRBase Accession/Entrez ID	MIMAT0001579	114784
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ1007G16.1//dJ1007G16.2//dJ947L8.1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CSMD2	chr1:34145659(-) A-I      intronic chr1:34145689(-) A-I      intronic chr1:34146692(-) A-I      intronic chr1:34064434(-) A-I      3'UTR chr1:34146681(-) A-I      intronic chr1:34146669(-) A-I      intronic chr1:34145698(-) A-I      intronic chr1:34064465(-) A-I      3'UTR chr1:34064466(-) A-I      3'UTR chr1:34145665(-) A-I      intronic chr1:34145688(-) A-I      intronic chr1:34145701(-) A-I      intronic chr1:34145699(-) A-I      intronic chr1:34493787(-) A-I      intronic chr1:34493782(-) A-I      intronic chr1:34146700(-) A-I      intronic chr1:34457930(-) A-I      intronic chr1:34493748(-) A-I      intronic chr1:34147438(-) A-I      intronic chr1:34058427(-) A-I      intronic chr1:34456851(-) A-I      intronic chr1:34465192(-) A-I      intronic chr1:34616506(-) A-I      intronic chr1:34147442(-) A-I      intronic chr1:34056879(-) A-I      intronic chr1:34057303(-) A-I      intronic chr1:34056727(-) A-I      intronic chr1:34483336(-) A-I      intronic chr1:34508663(-) A-I      intronic chr1:34147400(-) A-I      intronic chr1:34478207(-) A-I      intronic chr1:34370428(-) A-I      intronic chr1:34057363(-) A-I      intronic chr1:34131195(-) A-I      intronic chr1:34095480(-) A-I      intronic chr1:34146663(-) A-I      intronic chr1:34146756(-) A-I      intronic chr1:34147417(-) A-I      intronic chr1:34373503(-) A-I      intronic chr1:34373485(-) A-I      intronic chr1:34493676(-) A-I      intronic chr1:34627217(-) A-I      intronic chr1:34146689(-) A-I      intronic chr1:34056726(-) A-I      intronic chr1:34146770(-) A-I      intronic chr1:34146603(-) A-I      intronic chr1:34146698(-) A-I      intronic chr1:33994819(-) A-I      intronic chr1:34374269(-) A-I      intronic chr1:34493669(-) A-I      intronic chr1:34493774(-) A-I      intronic chr1:34478181(-) A-I      intronic chr1:34615918(-) A-I      intronic chr1:34056882(-) A-I      intronic chr1:34543681(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CSMD2	chr1:33981660-33981661(-) m6A 3'UTR       24209618//25456834 chr1:33981691-33981692(-) m6A 3'UTR       24209618//25456834 chr1:33981721-33981722(-) m6A 3'UTR       24209618//25456834 chr1:33981754-33981755(-) m6A 3'UTR       25456834 chr1:33981840-33981841(-) m6A 3'UTR       25456834 chr1:33981857-33981858(-) m6A 3'UTR       25456834 chr1:33981896-33981897(-) m6A 3'UTR       25456834 chr1:33981985-33981986(-) m6A 3'UTR       25456834//24981863 chr1:33982031-33982032(-) m6A 3'UTR       25456834//24981863 chr1:34065338-34065339(-) m6A 3'UTR//exon//intron       25456834 chr1:34065404-34065405(-) m6A 3'UTR//exon//intron       25456834 chr1:34065419-34065420(-) m6A 3'UTR//exon//intron       24209618//25456834 chr1:34065439-34065440(-) m6A 3'UTR//exon//intron       24209618//25456834 chr1:34065463-34065464(-) m6A 3'UTR//exon//intron       24209618//25456834 chr1:34065473-34065474(-) m6A 3'UTR//exon//intron       24209618//25456834 chr1:34237885-34237886(-) m6A 3'UTR//intron       24209618 chr1:34237896-34237897(-) m6A 3'UTR//intron       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CSMD2	Exosome Blood     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hcmv-miR-US5-1	Panobinostat       6918837 Irinotecan       60838 Topotecan       60700 l-685,458       5479543 Palbociclib       5330286 Sorafenib       216239 5-Chloro-N4-(2-(isopropylsulfonyl)phenyl)-N2-(2-methoxy-4-(4-(4-methylpiperazin-1-yl)piperidin-1-yl)phenyl)pyrimidine-2,4-diamine       16038120 Dovitinib       135398510 Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US5-1
Interactor2: CSMD2

Evidence Support:

Prediction-Evidence	miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg