Detail Information

Basic Information:


  VIRBase ID:  

VHID00225224

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL148D:           STK40:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL148D STK40
miRBase
Accession/Entrez ID		 MIMAT0001578 83931
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - SgK495//SHIK

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STK40
chr1:36842537(-) A-I      intronic
chr1:36834012(-) A-I      intronic
chr1:36848621(-) A-I      intronic
chr1:36834020(-) A-I      intronic
chr1:36834048(-) A-I      intronic
chr1:36834052(-) A-I      intronic
chr1:36848610(-) A-I      intronic
chr1:36848617(-) A-I      intronic
chr1:36848618(-) A-I      intronic
chr1:36848633(-) A-I      intronic
chr1:36848647(-) A-I      intronic
chr1:36848719(-) A-I      intronic
chr1:36848722(-) A-I      intronic
chr1:36848726(-) A-I      intronic
chr1:36848728(-) A-I      intronic
chr1:36848731(-) A-I      intronic
chr1:36848742(-) A-I      intronic
chr1:36848750(-) A-I      intronic
chr1:36848752(-) A-I      intronic
chr1:36848794(-) A-I      intronic
chr1:36848764(-) A-I      intronic
chr1:36848674(-) A-I      intronic
chr1:36847999(-) A-I      intronic
chr1:36847963(-) A-I      intronic
chr1:36847960(-) A-I      intronic
chr1:36847823(-) A-I      intronic
chr1:36844127(-) A-I      intronic
chr1:36844107(-) A-I      intronic
chr1:36843126(-) A-I      intronic
chr1:36843058(-) A-I      intronic
chr1:36830695(-) A-I      intronic
chr1:36830368(-) A-I      intronic
chr1:36830342(-) A-I      intronic
chr1:36828827(-) A-I      intronic
chr1:36828625(-) A-I      intronic
chr1:36823387(-) A-I      intronic
chr1:36843048(-) A-I      intronic
chr1:36843071(-) A-I      intronic
chr1:36842968(-) A-I      intronic
chr1:36842587(-) A-I      intronic
chr1:36842578(-) A-I      intronic
chr1:36842575(-) A-I      intronic
chr1:36842552(-) A-I      intronic
chr1:36843072(-) A-I      intronic
chr1:36842551(-) A-I      intronic
chr1:36841459(-) A-I      intronic
chr1:36841456(-) A-I      intronic
chr1:36841387(-) A-I      intronic
chr1:36837239(-) A-I      intronic
chr1:36837093(-) A-I      intronic
chr1:36837092(-) A-I      intronic
chr1:36837033(-) A-I      intronic
chr1:36830720(-) A-I      intronic
chr1:36830698(-) A-I      intronic
chr1:36843012(-) A-I      intronic
chr1:36843010(-) A-I      intronic
chr1:36843005(-) A-I      intronic
chr1:36843022(-) A-I      intronic
chr1:36837910(-) A-I      intronic
chr1:36830768(-) A-I      intronic
chr1:36837994(-) A-I      intronic
chr1:36842644(-) A-I      intronic
chr1:36837962(-) A-I      intronic
chr1:36828635(-) A-I      intronic
chr1:36826147(-) A-I      intronic
chr1:36829218(-) A-I      intronic
chr1:36842577(-) A-I      intronic
chr1:36832501(-) A-I      intronic
chr1:36842942(-) A-I      intronic
chr1:36826179(-) A-I      intronic
chr1:36830795(-) A-I      intronic
chr1:36837839(-) A-I      intronic
chr1:36826174(-) A-I      intronic
chr1:36848687(-) A-I      intronic
chr1:36844330(-) A-I      intronic
chr1:36849746(-) A-I      intronic
chr1:36812049(-) A-I      intronic
chr1:36843850(-) A-I      intronic
chr1:36830730(-) A-I      intronic
chr1:36837840(-) A-I      intronic
chr1:36842514(-) A-I      intronic
chr1:36842456(-) A-I      intronic
chr1:36842505(-) A-I      intronic
chr1:36836615(-) A-I      intronic
chr1:36842517(-) A-I      intronic
chr1:36846155(-) A-I      intronic
chr1:36830766(-) A-I      intronic
chr1:36830704(-) A-I      intronic
chr1:36847147(-) A-I      intronic
chr1:36828817(-) A-I      intronic
chr1:36836899(-) A-I      intronic
chr1:36828821(-) A-I      intronic
chr1:36834061(-) A-I      intronic
chr1:36828704(-) A-I      intronic
chr1:36848688(-) A-I      intronic
chr1:36828608(-) A-I      intronic
chr1:36842453(-) A-I      intronic
chr1:36830729(-) A-I      intronic
chr1:36842582(-) A-I      intronic
chr1:36813257(-) A-I      intronic
chr1:36830863(-) A-I      intronic
chr1:36847363(-) A-I      intronic
chr1:36826153(-) A-I      intronic
chr1:36849727(-) A-I      intronic
chr1:36829294(-) A-I      intronic
chr1:36836703(-) A-I      intronic
chr1:36847362(-) A-I      intronic
chr1:36847289(-) A-I      intronic
chr1:36847154(-) A-I      intronic
chr1:36826416(-) A-I      intronic
chr1:36844239(-) A-I      intronic
chr1:36836117(-) A-I      intronic
chr1:36837914(-) A-I      intronic
chr1:36828822(-) A-I      intronic
chr1:36844331(-) A-I      intronic
chr1:36842917(-) A-I      intronic
chr1:36830395(-) A-I      intronic
chr1:36847227(-) A-I      intronic
chr1:36832573(-) A-I      intronic
chr1:36847864(-) A-I      intronic
chr1:36836574(-) A-I      intronic
chr1:36830689(-) A-I      intronic
chr1:36828867(-) A-I      intronic
chr1:36826239(-) A-I      intronic
chr1:36837822(-) A-I      intronic
chr1:36847243(-) A-I      intronic
chr1:36829496(-) A-I      intronic
chr1:36842515(-) A-I      intronic
chr1:36842645(-) A-I      intronic
chr1:36844339(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED STK40
chr1:36828608(-) A-G intron -    22484847
chr1:36829218(-) A-G intron -    22484847
chr1:36829294(-) A-G intron -    22484847
chr1:36830730(-) A-G intron -    22484847
chr1:36836574(-) A-G intron -    22484847
chr1:36842453(-) A-G intron -    22484847
chr1:36842456(-) A-G intron -    22484847
chr1:36842514(-) A-G intron -    22484847
chr1:36842515(-) A-G intron -    22484847
chr1:36842517(-) A-G intron -    22484847
chr1:36842577(-) A-G intron -    22484847
chr1:36842582(-) A-G intron -    22484847
chr1:36842644(-) A-G intron -    22484847
chr1:36842645(-) A-G intron -    22484847
chr1:36842942(-) A-G intron -    22484847
chr1:36843081(-) G-A intron -    22484847
chr1:36843091(-) C-A intron -    22484847
chr1:36847940(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STK40
chr1:36805926-36805927(-) m6A 3'UTR       24284625//27773535
chr1:36806121-36806122(-) m6A 3'UTR       24284625//24981863//27773535
chr1:36806149-36806150(-) m6A 3'UTR       24284625//24981863//27773535
chr1:36806249-36806250(-) m6A 3'UTR       24284625//27773535
chr1:36806271-36806272(-) m6A 3'UTR       24284625//27773535
chr1:36806298-36806299(-) m6A 3'UTR       24284625//27773535
chr1:36806330-36806331(-) m6A 3'UTR       27773535
chr1:36806381-36806382(-) m6A 3'UTR       24284625
chr1:36806486-36806487(-) m6A 3'UTR       27773535
chr1:36806590-36806591(-) m6A 3'UTR       27773535
chr1:36806721-36806722(-) m6A 3'UTR       24284625//24981863//27773535
chr1:36806813-36806814(-) m6A 3'UTR       24981863//27773535
chr1:36806818-36806819(-) m6A 3'UTR       24981863//27773535
chr1:36806836-36806837(-) m6A 3'UTR       24981863//27773535
chr1:36807226-36807227(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr1:36807232-36807233(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr1:36807243-36807244(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr1:36807265-36807266(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr1:36807392-36807393(-) m6A 3'UTR//CDS       24284625
chr1:36814344-36814345(-) m6A CDS       27773535
chr1:36814356-36814357(-) m6A CDS       27773535
chr1:36819982-36819983(-) m6A CDS       27773535
chr1:36819997-36819998(-) m6A CDS       27773535
chr1:36820856-36820857(-) m6A CDS//exon       27773535
chr1:36820919-36820920(-) m6A CDS//exon       27773535
chr1:36820951-36820952(-) m6A CDS//exon       27773535
chr1:36821008-36821009(-) m6A CDS//exon       27773535
chr1:36823957-36823958(-) m6A CDS//exon       27371828
chr1:36826834-36826835(-) m6A CDS//exon       24209618//27371828
chr1:36826913-36826914(-) m6A CDS//exon       24209618//27371828//27773536
chr1:36828218-36828219(-) m6A exon//intron       27371828//27773536
chr1:36828253-36828254(-) m6A exon//intron       27371828
chr1:36833487-36833488(-) m6A 5'UTR//exon//intron       27773535
chr1:36833509-36833510(-) m6A 5'UTR//exon//intron       27773535
chr1:36833558-36833559(-) m6A 5'UTR//exon//intron       24284625//27773535
chr1:36851356-36851357(-) m6A 5'UTR//exon       24209618//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-UL148D
Exosome K562 cells     24460325
STK40
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-UL148D
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL148D
Interactor2: STK40

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA
Support Database RepTar//VmiReg

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