Detail Information

Basic Information:


  VIRBase ID:  

VHID00225110

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL148D:           PGBD5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL148D PGBD5
miRBase
Accession/Entrez ID		 MIMAT0001578 79605
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PGBD5
chr1:230467054(-) A-I      intronic
chr1:230467050(-) A-I      intronic
chr1:230467079(-) A-I      intronic
chr1:230467075(-) A-I      intronic
chr1:230467067(-) A-I      intronic
chr1:230461947(-) A-I      intronic
chr1:230461956(-) A-I      intronic
chr1:230556679(-) A-I      intronic
chr1:230466991(-) A-I      intronic
chr1:230540028(-) A-I      intronic
chr1:230464999(-) A-I      intronic
chr1:230462129(-) A-I      intronic
chr1:230461907(-) A-I      intronic
chr1:230462500(-) A-I      intronic
chr1:230462446(-) A-I      intronic
chr1:230462337(-) A-I      intronic
chr1:230542709(-) A-I      intronic
chr1:230494905(-) A-I      intronic
chr1:230554502(-) A-I      intronic
chr1:230542719(-) A-I      intronic
chr1:230549177(-) A-I      intronic
chr1:230461966(-) A-I      intronic
chr1:230540413(-) A-I      intronic
chr1:230461959(-) A-I      intronic
chr1:230467030(-) A-I      intronic
chr1:230461919(-) A-I      intronic
chr1:230462320(-) A-I      intronic
chr1:230526623(-) A-I      intronic
chr1:230467085(-) A-I      intronic
chr1:230526653(-) A-I      intronic
chr1:230540150(-) A-I      intronic
chr1:230519038(-) A-I      intronic
chr1:230521996(-) A-I      intronic
chr1:230481933(-) A-I      intronic
chr1:230540157(-) A-I      intronic
chr1:230462126(-) A-I      intronic
chr1:230549199(-) A-I      intronic
chr1:230462310(-) A-I      intronic
chr1:230554314(-) A-I      intronic
chr1:230510041(-) A-I      intronic
chr1:230467513(-) A-I      intronic
chr1:230479842(-) A-I      intronic
chr1:230464746(-) A-I      intronic
chr1:230535004(-) A-I      intronic
chr1:230521876(-) A-I      intronic
chr1:230462455(-) A-I      intronic
chr1:230481917(-) A-I      intronic
chr1:230540229(-) A-I      intronic
chr1:230462440(-) A-I      intronic
chr1:230462273(-) A-I      intronic
chr1:230466954(-) A-I      intronic
chr1:230482060(-) A-I      intronic
chr1:230538364(-) A-I      intronic
chr1:230467124(-) A-I      intronic
chr1:230467498(-) A-I      intronic
chr1:230464960(-) A-I      intronic
chr1:230462281(-) A-I      intronic
chr1:230532980(-) A-I      intronic
chr1:230462081(-) A-I      intronic
chr1:230481740(-) A-I      intronic
chr1:230546982(-) A-I      intronic
chr1:230550831(-) A-I      intronic
chr1:230500803(-) A-I      intronic
chr1:230481927(-) A-I      intronic
chr1:230462435(-) A-I      intronic
chr1:230466955(-) A-I      intronic
chr1:230464923(-) A-I      intronic
chr1:230481980(-) A-I      intronic
chr1:230509664(-) A-I      intronic
chr1:230482059(-) A-I      intronic
chr1:230519019(-) A-I      intronic
chr1:230461967(-) A-I      intronic
chr1:230462342(-) A-I      intronic
chr1:230462430(-) A-I      intronic
chr1:230550808(-) A-I      intronic
chr1:230550828(-) A-I      intronic
chr1:230481737(-) A-I      intronic
chr1:230521953(-) A-I      intronic
chr1:230462467(-) A-I      intronic
chr1:230542718(-) A-I      intronic
chr1:230542705(-) A-I      intronic
chr1:230510149(-) A-I      intronic
chr1:230467535(-) A-I      intronic
chr1:230550818(-) A-I      intronic
chr1:230538316(-) A-I      intronic
chr1:230467110(-) A-I      intronic
chr1:230479850(-) A-I      intronic
chr1:230526650(-) A-I      intronic
chr1:230538338(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PGBD5
chr1:230457843-230457844(-) m6A 3'UTR       24284625//25456834
chr1:230457850-230457851(-) m6A 3'UTR       24284625//25456834
chr1:230457992-230457993(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr1:230458058-230458059(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr1:230458063-230458064(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr1:230458071-230458072(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr1:230458094-230458095(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr1:230458197-230458198(-) m6A 3'UTR       22608085
chr1:230458311-230458312(-) m6A 3'UTR       25456834//22608085
chr1:230458517-230458518(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr1:230458637-230458638(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr1:230458656-230458657(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr1:230458755-230458756(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:230458867-230458868(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:230458956-230458957(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:230459021-230459022(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:230459030-230459031(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:230459086-230459087(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:230459092-230459093(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:230459154-230459155(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:230459218-230459219(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:230468632-230468633(-) m6A CDS//exon       24284625
chr1:230468663-230468664(-) m6A CDS//exon       24284625
chr1:230486826-230486827(-) m6A CDS       24284625
chr1:230492644-230492645(-) m6A CDS       24284625
chr1:230492676-230492677(-) m6A CDS       24284625
chr1:230492725-230492726(-) m6A CDS       24284625
chr1:230492974-230492975(-) m6A CDS       24284625//25456834//27371828//27773536
chr1:230492988-230492989(-) m6A CDS       24284625//25456834//27371828//27773536
chr1:230493003-230493004(-) m6A CDS       24284625//25456834//27371828//27773536
chr1:230493027-230493028(-) m6A CDS       25456834//27371828//27773536
chr1:230498037-230498038(-) m6A intron       25456834//27371828//27773536
chr1:230561375-230561376(-) m6A 5'UTR       27773536
chr1:230561470-230561471(-) m6A 5'UTR       27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-UL148D
Exosome K562 cells     24460325
PGBD5
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-UL148D
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL148D
Interactor2: PGBD5

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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