Detail Information

Basic Information:


  VIRBase ID:  

VHID00224404

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL148D:           SF3A3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL148D SF3A3
miRBase
Accession/Entrez ID		 MIMAT0001578 10946
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - PRP9//PRPF9//SAP61//SF3a60

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SF3A3
chr1:38430157(-) A-I      intronic
chr1:38423154(-) A-I      3'UTR
chr1:38423150(-) A-I      3'UTR
chr1:38423147(-) A-I      3'UTR
chr1:38423133(-) A-I      3'UTR
chr1:38441680(-) A-I      intronic
chr1:38456345(-) A-I      5'UTR
chr1:38423141(-) A-I      3'UTR
chr1:38423136(-) A-I      3'UTR
chr1:38450548(-) A-I      intronic
chr1:38449528(-) A-I      intronic
chr1:38449038(-) A-I      intronic
chr1:38449035(-) A-I      intronic
chr1:38448847(-) A-I      intronic
chr1:38448775(-) A-I      intronic
chr1:38448748(-) A-I      intronic
chr1:38443959(-) A-I      intronic
chr1:38443942(-) A-I      intronic
chr1:38443899(-) A-I      intronic
chr1:38443844(-) A-I      intronic
chr1:38443140(-) A-I      intronic
chr1:38440241(-) A-I      intronic
chr1:38440113(-) A-I      intronic
chr1:38435963(-) A-I      intronic
chr1:38433162(-) A-I      intronic
chr1:38433133(-) A-I      intronic
chr1:38431647(-) A-I      intronic
chr1:38430155(-) A-I      intronic
chr1:38430105(-) A-I      intronic
chr1:38430094(-) A-I      intronic
chr1:38429846(-) A-I      intronic
chr1:38429751(-) A-I      intronic
chr1:38429694(-) A-I      intronic
chr1:38429423(-) A-I      intronic
chr1:38429403(-) A-I      intronic
chr1:38429367(-) A-I      intronic
chr1:38429361(-) A-I      intronic
chr1:38429321(-) A-I      intronic
chr1:38429296(-) A-I      intronic
chr1:38424865(-) A-I      intronic
chr1:38425194(-) A-I      intronic
chr1:38425208(-) A-I      intronic
chr1:38452882(-) A-I      intronic
chr1:38450565(-) A-I      intronic
chr1:38452803(-) A-I      intronic
chr1:38450722(-) A-I      intronic
chr1:38450653(-) A-I      intronic
chr1:38450640(-) A-I      intronic
chr1:38450639(-) A-I      intronic
chr1:38428980(-) A-I      intronic
chr1:38427169(-) A-I      intronic
chr1:38427144(-) A-I      intronic
chr1:38427100(-) A-I      intronic
chr1:38427089(-) A-I      intronic
chr1:38427022(-) A-I      intronic
chr1:38452950(-) A-I      intronic
chr1:38452954(-) A-I      intronic
chr1:38452955(-) A-I      intronic
chr1:38426620(-) A-I      intronic
chr1:38426614(-) A-I      intronic
chr1:38426581(-) A-I      intronic
chr1:38426554(-) A-I      intronic
chr1:38426530(-) A-I      intronic
chr1:38425592(-) A-I      intronic
chr1:38425584(-) A-I      intronic
chr1:38425219(-) A-I      intronic
chr1:38452944(-) A-I      intronic
chr1:38452924(-) A-I      intronic
chr1:38452889(-) A-I      intronic
chr1:38456401(-) A-I      5'UTR
chr1:38456398(-) A-I      5'UTR
chr1:38456362(-) A-I      5'UTR
chr1:38425087(-) A-I      intronic
chr1:38449052(-) A-I      intronic
chr1:38445840(-) A-I      intronic
chr1:38452319(-) A-I      intronic
chr1:38426597(-) A-I      intronic
chr1:38449389(-) A-I      intronic
chr1:38435774(-) A-I      intronic
chr1:38427510(-) A-I      intronic
chr1:38426385(-) A-I      intronic
chr1:38449546(-) A-I      intronic
chr1:38435895(-) A-I      intronic
chr1:38451800(-) A-I      intronic
chr1:38429658(-) A-I      intronic
chr1:38430648(-) A-I      intronic
chr1:38430167(-) A-I      intronic
chr1:38427134(-) A-I      intronic
chr1:38456192(-) A-I      5'UTR
chr1:38456251(-) A-I      5'UTR
chr1:38435349(-) A-I      NonSyn:Glu->Gly
chr1:38429393(-) A-I      intronic
chr1:38435894(-) A-I      intronic
chr1:38429742(-) A-I      intronic
chr1:38429671(-) A-I      intronic
chr1:38449202(-) A-I      intronic
chr1:38448523(-) A-I      intronic
chr1:38435718(-) A-I      intronic
chr1:38449135(-) A-I      intronic
chr1:38430278(-) A-I      intronic
chr1:38425241(-) A-I      intronic
chr1:38456323(-) A-I      5'UTR
chr1:38435704(-) A-I      intronic
chr1:38433239(-) A-I      intronic
chr1:38427000(-) A-I      intronic
chr1:38454929(-) A-I      intronic
chr1:38449527(-) A-I      intronic
chr1:38428507(-) A-I      intronic
chr1:38427180(-) A-I      intronic
chr1:38452326(-) A-I      intronic
chr1:38456382(-) A-I      5'UTR
chr1:38456393(-) A-I      5'UTR
chr1:38456585(-) A-I      5'UTR
chr1:38429501(-) A-I      intronic
chr1:38425209(-) A-I      intronic
chr1:38456568(-) A-I      5'UTR
chr1:38440139(-) A-I      intronic
chr1:38451892(-) A-I      intronic
chr1:38448546(-) A-I      intronic
chr1:38427675(-) A-I      intronic
chr1:38456218(-) A-I      5'UTR
chr1:38427173(-) A-I      intronic
chr1:38456321(-) A-I      5'UTR
chr1:38450620(-) A-I      intronic
chr1:38456560(-) A-I      5'UTR
chr1:38456256(-) A-I      5'UTR
chr1:38456273(-) A-I      5'UTR
chr1:38448882(-) A-I      intronic
chr1:38435833(-) A-I      intronic
chr1:38435920(-) A-I      intronic
chr1:38429500(-) A-I      intronic
chr1:38429668(-) A-I      intronic
chr1:38448684(-) A-I      intronic
chr1:38430179(-) A-I      intronic
chr1:38426598(-) A-I      intronic
chr1:38429805(-) A-I      intronic
chr1:38427074(-) A-I      intronic
chr1:38456333(-) A-I      5'UTR
chr1:38454910(-) A-I      intronic
chr1:38449053(-) A-I      intronic
chr1:38424875(-) A-I      intronic
chr1:38430274(-) A-I      intronic
chr1:38448722(-) A-I      intronic
chr1:38429429(-) A-I      intronic
chr1:38448726(-) A-I      intronic
chr1:38454941(-) A-I      intronic
chr1:38452362(-) A-I      intronic
chr1:38449176(-) A-I      intronic
chr1:38452384(-) A-I      intronic
chr1:38427091(-) A-I      intronic
chr1:38435853(-) A-I      intronic
chr1:38448055(-) A-I      intronic
chr1:38429438(-) A-I      intronic
chr1:38452285(-) A-I      intronic
chr1:38435855(-) A-I      intronic
chr1:38435720(-) A-I      intronic
chr1:38430228(-) A-I      intronic
chr1:38427509(-) A-I      intronic
chr1:38448510(-) A-I      intronic
chr1:38452440(-) A-I      intronic
chr1:38450683(-) A-I      intronic
chr1:38449595(-) A-I      intronic
chr1:38452227(-) A-I      intronic
chr1:38452294(-) A-I      intronic
chr1:38430279(-) A-I      intronic
chr1:38455934(-) A-I      5'UTR
chr1:38448852(-) A-I      intronic
chr1:38435804(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SF3A3
chr1:38435349(-) A-I exon CDS    15342557
chr1:38449910(-) A-I exon CDS    15342557
chr1:38423079(-) A-T exon 3'UTR    22484847
chr1:38423080(-) C-A exon 3'UTR    22484847
chr1:38425087(-) A-G intron -    22484847
chr1:38426597(-) A-G intron -    22484847
chr1:38426598(-) A-G intron -    22484847
chr1:38427074(-) A-G intron -    22484847
chr1:38427091(-) A-G intron -    22484847
chr1:38427173(-) A-G intron -    22484847
chr1:38427180(-) A-G intron -    22484847
chr1:38428507(-) A-G intron -    22484847
chr1:38429393(-) A-G intron -    22484847
chr1:38429429(-) A-G intron -    22484847
chr1:38429438(-) A-G intron -    22484847
chr1:38429500(-) A-G intron -    22484847
chr1:38429501(-) A-G intron -    22484847
chr1:38429668(-) A-G intron -    22484847
chr1:38430167(-) A-G intron -    22484847
chr1:38430179(-) A-G intron -    22484847
chr1:38430228(-) A-G intron -    22484847
chr1:38430274(-) A-G intron -    22484847
chr1:38430278(-) A-G intron -    22484847
chr1:38430279(-) A-G intron -    22484847
chr1:38430648(-) A-G intron -    22484847
chr1:38431296(-) G-T intron -    22484847
chr1:38435833(-) A-G intron -    22484847
chr1:38435853(-) A-G intron -    22484847
chr1:38435894(-) A-G intron -    22484847
chr1:38435895(-) A-G intron -    22484847
chr1:38440139(-) A-G intron -    22484847
chr1:38448684(-) A-G intron -    22484847
chr1:38448722(-) A-G intron -    22484847
chr1:38448726(-) A-G intron -    22484847
chr1:38448852(-) A-G intron -    22484847
chr1:38448882(-) A-G intron -    22484847
chr1:38449389(-) A-G intron -    22484847
chr1:38449595(-) A-G intron -    22484847
chr1:38450683(-) A-G intron -    22484847
chr1:38451795(-) C-T intron -    22484847
chr1:38452285(-) A-G intron -    22484847
chr1:38452294(-) A-G intron -    22484847
chr1:38452319(-) A-G intron -    22484847
chr1:38452326(-) A-G intron -    22484847
chr1:38452384(-) A-G intron -    22484847
chr1:38452440(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SF3A3
chr1:38422796-38422797(-) m6A 3'UTR       -
chr1:38423866-38423867(-) m6A CDS//exon       24981863
chr1:38423872-38423873(-) m6A CDS//exon       24981863
chr1:38423892-38423893(-) m6A CDS//exon       24981863
chr1:38423921-38423922(-) m6A CDS//exon       24981863
chr1:38435068-38435069(-) m6A CDS//exon       27773535
chr1:38435267-38435268(-) m6A CDS//exon       24981863//27773535//27371828
chr1:38435339-38435340(-) Am CDS//exon       -
chr1:38435358-38435359(-) m6A CDS//exon       24981863//27773535//27371828
chr1:38435404-38435405(-) m6A CDS//exon       24981863//27773535
chr1:38442604-38442605(-) m6A CDS//exon       27773535
chr1:38442610-38442611(-) m6A CDS//exon       27773535
chr1:38442622-38442623(-) m6A CDS//exon       27773535
chr1:38444474-38444475(-) m6A CDS//exon       27773535
chr1:38444497-38444498(-) m6A CDS//exon       27773535
chr1:38450418-38450419(-) m6A CDS//exon       27773535
chr1:38453286-38453287(-) m6A CDS//exon//intron       27773535
chr1:38453316-38453317(-) m6A CDS//exon//intron       27773535
chr1:38453485-38453486(-) m6A CDS//exon//intron       24209618//27773535//22575960
chr1:38455259-38455260(-) m6A CDS//exon       24209618//27773535//22575960
chr1:38455301-38455302(-) m6A exon//intron       24209618//24981863//27773535//27371828//22575960
chr1:38455630-38455631(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:38455713-38455714(-) m6A 5'UTR//exon       24284625//24209618//24981863//27371828//22575960//22608085
chr1:38455744-38455745(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr1:38455806-38455807(-) m6A 5'UTR       24284625//25456834
chr1:38455873-38455874(-) m6A 5'UTR       24284625
chr1:38456116-38456117(-) m6A 5'UTR       27773535
chr1:38456130-38456131(-) m6A 5'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-UL148D
Exosome K562 cells     24460325
SF3A3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hcmv-miR-UL148D
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL148D
Interactor2: SF3A3

Evidence Support:


Prediction-Evidence cRep//miRanda//RNAHybrid
Support Database RepTar//VmiReg

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