Basic Information:

  VIRBase ID:  

VHID00223925

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL148D:  MIMAT0001578          PTGFRN:  NM_020440     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL148D	PTGFRN
miRBase Accession/Entrez ID	MIMAT0001578	5738
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD315//CD9P-1//EWI-F//FPRP//SMAP-6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PTGFRN	chr1:117460465(+) A-I      intronic chr1:117466926(+) A-I      intronic chr1:117457359(+) A-I      intronic chr1:117460305(+) A-I      intronic chr1:117457360(+) A-I      intronic chr1:117460338(+) A-I      intronic chr1:117466863(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PTGFRN	chr1:117484450-117484451(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:117484575-117484576(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:117484624-117484625(+) m6A CDS       24209618//22575960 chr1:117484678-117484679(+) m6A CDS       24209618 chr1:117484687-117484688(+) m6A CDS       24209618 chr1:117491862-117491863(+) m6A CDS       24284625 chr1:117491867-117491868(+) m6A CDS       24284625 chr1:117491891-117491892(+) m6A CDS       24284625 chr1:117492080-117492081(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117492123-117492124(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117503870-117503871(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:117503948-117503949(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:117504005-117504006(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504059-117504060(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504110-117504111(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504129-117504130(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504137-117504138(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504163-117504164(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504176-117504177(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504211-117504212(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504216-117504217(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117504224-117504225(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117509718-117509719(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr1:117509750-117509751(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr1:117509825-117509826(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr1:117527352-117527353(+) m6A CDS       24284625 chr1:117527379-117527380(+) Tm CDS       - chr1:117527415-117527416(+) m6A CDS       24284625//25456834//24981863 chr1:117527487-117527488(+) m6A CDS       25456834//24981863 chr1:117527493-117527494(+) m6A CDS       25456834//24981863 chr1:117529544-117529545(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117529580-117529581(+) Y CDS       26075521 chr1:117529584-117529585(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117529648-117529649(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117529664-117529665(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117529685-117529686(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117529711-117529712(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:117529754-117529755(+) m6A 3'UTR//intron       24284625//24209618//24981863//22575960//22608085 chr1:117530064-117530065(+) m6A 3'UTR//intron       24284625 chr1:117530073-117530074(+) m6A 3'UTR//intron       24284625 chr1:117530139-117530140(+) m6A 3'UTR//intron       24284625//24981863 chr1:117530140-117530141(+) Y 3'UTR//intron       26075521 chr1:117530157-117530158(+) m6A 3'UTR//intron       24284625//24981863 chr1:117530410-117530411(+) m6A 3'UTR//intron       24981863 chr1:117530467-117530468(+) m6A 3'UTR//intron       24981863 chr1:117531746-117531747(+) m6A 3'UTR//intron       24981863//22608085 chr1:117531767-117531768(+) m6A 3'UTR//intron       24981863//22608085 chr1:117531774-117531775(+) m6A 3'UTR//intron       24981863//22608085 chr1:117531789-117531790(+) m6A 3'UTR//intron       24981863 chr1:117532516-117532517(+) m6A 3'UTR//intron       24284625 chr1:117532560-117532561(+) m6A 3'UTR//exon       24284625 chr1:117532605-117532606(+) m6A 3'UTR//exon       24981863//22608085 chr1:117532663-117532664(+) m6A 3'UTR//exon       24981863//22608085 chr1:117532705-117532706(+) m6A 3'UTR//exon       24981863//22608085 chr1:117532840-117532841(+) m6A 3'UTR//exon       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-UL148D	Exosome K562 cells     24460325
	PTGFRN	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hcmv-miR-UL148D	Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL148D
Interactor2: PTGFRN

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg