Basic Information:

  VIRBase ID:  

VHID00222516

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-3p:  MIMAT0001577          TTC38:  NM_017931     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL112-3p	TTC38
miRBase Accession/Entrez ID	MIMAT0001577	55020
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LL22NC03-5H6.5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TTC38	chr22:46666554(+) A-I      intronic chr22:46667597(+) A-I      intronic chr22:46666528(+) A-I      intronic chr22:46666565(+) A-I      intronic chr22:46666585(+) A-I      intronic chr22:46666577(+) A-I      intronic chr22:46666569(+) A-I      intronic chr22:46667492(+) A-I      intronic chr22:46667950(+) A-I      intronic chr22:46667549(+) A-I      intronic chr22:46679728(+) A-I      intronic chr22:46679642(+) A-I      intronic chr22:46667457(+) A-I      intronic chr22:46679655(+) A-I      intronic chr22:46679731(+) A-I      intronic chr22:46679699(+) A-I      intronic chr22:46687774(+) A-I      intronic chr22:46666163(+) A-I      intronic chr22:46666475(+) A-I      intronic chr22:46666491(+) A-I      intronic chr22:46666593(+) A-I      intronic chr22:46666617(+) A-I      intronic chr22:46666858(+) A-I      intronic chr22:46667473(+) A-I      intronic chr22:46667486(+) A-I      intronic chr22:46667462(+) A-I      intronic chr22:46667294(+) A-I      intronic chr22:46666611(+) A-I      intronic chr22:46667249(+) A-I      intronic chr22:46667169(+) A-I      intronic chr22:46678850(+) A-I      intronic chr22:46679690(+) A-I      intronic chr22:46668027(+) A-I      intronic chr22:46688184(+) A-I      intronic chr22:46666568(+) A-I      intronic chr22:46667953(+) A-I      intronic chr22:46687732(+) A-I      intronic chr22:46667291(+) A-I      intronic chr22:46688132(+) A-I      intronic chr22:46666544(+) A-I      intronic chr22:46667988(+) A-I      intronic chr22:46666165(+) A-I      intronic chr22:46666612(+) A-I      intronic chr22:46667643(+) A-I      intronic chr22:46668068(+) A-I      intronic chr22:46665770(+) A-I      intronic chr22:46668085(+) A-I      intronic chr22:46668071(+) A-I      intronic chr22:46665920(+) A-I      intronic chr22:46666676(+) A-I      intronic chr22:46667541(+) A-I      intronic chr22:46688150(+) A-I      intronic chr22:46687733(+) A-I      intronic chr22:46687759(+) A-I      intronic chr22:46665871(+) A-I      intronic chr22:46667952(+) A-I      intronic chr22:46667673(+) A-I      intronic chr22:46679670(+) A-I      intronic chr22:46666719(+) A-I      intronic chr22:46667479(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TTC38	chr22:46688132(+) A-I intron -    22327324 chr22:46667988(+) A-G intron -    22484847 chr22:46687733(+) A-G intron -    22484847 chr22:46688132(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TTC38	chr22:46663918-46663919(+) m6A 5'UTR//exon       24284625//25456834 chr22:46677984-46677985(+) m6A 3'UTR//intron       - chr22:46685312-46685313(+) m6A CDS       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TTC38	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL112-3p
Interactor2: TTC38

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg