Detail Information

Basic Information:


  VIRBase ID:  

VHID00221249

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL36-5p:           FBXO43:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL36-5p FBXO43
miRBase
Accession/Entrez ID		 MIMAT0001576 286151
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - EMI2//ERP1//FBX43

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FBXO43
chr8:101156274(-) A-I      intronic
chr8:101156137(-) A-I      intronic
chr8:101156283(-) A-I      intronic
chr8:101156164(-) A-I      intronic
chr8:101156575(-) A-I      intronic
chr8:101156574(-) A-I      intronic
chr8:101156120(-) A-I      intronic
chr8:101156970(-) A-I      intronic
chr8:101147970(-) A-I      intronic
chr8:101156138(-) A-I      intronic
chr8:101156552(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FBXO43
chr8:101156120(-) A-G intron -    22484847
chr8:101156203(-) A-G intron -    22484847
chr8:101156204(-) A-G intron -    22484847
chr8:101156552(-) A-G intron -    22484847
chr8:101156970(-) A-G intron -    22484847
chr8:101156978(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FBXO43
chr8:101146012-101146013(-) m6A 3'UTR       24981863//27773535
chr8:101146024-101146025(-) m6A 3'UTR       24981863//27773535
chr8:101146175-101146176(-) m6A 3'UTR//CDS       27773535
chr8:101146188-101146189(-) m6A 3'UTR//CDS       27773535
chr8:101146242-101146243(-) m6A 3'UTR//CDS       27773535
chr8:101152994-101152995(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr8:101152999-101153000(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr8:101153029-101153030(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr8:101153092-101153093(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr8:101153163-101153164(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr8:101153295-101153296(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153314-101153315(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153332-101153333(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153353-101153354(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153358-101153359(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153372-101153373(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153388-101153389(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153398-101153399(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153410-101153411(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr8:101153483-101153484(-) m6A 3'UTR//CDS//exon       -
chr8:101153555-101153556(-) m6A 3'UTR//CDS//exon       -
chr8:101153591-101153592(-) m6A 3'UTR//CDS//exon       -
chr8:101153601-101153602(-) m6A 3'UTR//CDS//exon       -
chr8:101153613-101153614(-) m6A 3'UTR//CDS//exon       24981863
chr8:101153702-101153703(-) m6A 3'UTR//CDS//exon       24981863
chr8:101153787-101153788(-) m6A 3'UTR//CDS//exon       24981863
chr8:101153844-101153845(-) m6A 3'UTR//CDS//exon       27773535
chr8:101153978-101153979(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr8:101154051-101154052(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr8:101154061-101154062(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr8:101154069-101154070(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr8:101154153-101154154(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr8:101157499-101157500(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-UL36-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
FBXO43
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL36-5p
Interactor2: FBXO43

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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