Basic Information:

  VIRBase ID:  

VHID00221247

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL36-5p:  MIMAT0001576          CCDC141:  NM_173648     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL36-5p	CCDC141
miRBase Accession/Entrez ID	MIMAT0001576	285025
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CAMDI

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC141	chr2:179818117(-) A-I      intronic chr2:179818101(-) A-I      intronic chr2:179818107(-) A-I      intronic chr2:179704195(-) A-I      intronic chr2:179704221(-) A-I      intronic chr2:179772927(-) A-I      intronic chr2:179725959(-) A-I      intronic chr2:179726300(-) A-I      intronic chr2:179726032(-) A-I      intronic chr2:179869676(-) A-I      intronic chr2:179822551(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC141	chr2:179726251(-) A-G intron -    22484847 chr2:179726300(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC141	chr2:179695715-179695716(-) m6A 3'UTR//intron       27773535 chr2:179695765-179695766(-) m6A 3'UTR//intron       27773535 chr2:179695793-179695794(-) m6A 3'UTR//intron       27773535 chr2:179698877-179698878(-) m6A 3'UTR//exon//intron       25456834//24981863//27773535 chr2:179698963-179698964(-) m6A CDS//exon//intron       25456834//24981863//27773535 chr2:179699038-179699039(-) m6A CDS//exon//intron       25456834//24981863//27773535 chr2:179699108-179699109(-) m6A CDS//exon//intron       27773535 chr2:179701585-179701586(-) m6A 3'UTR//intron       24981863 chr2:179701873-179701874(-) m6A CDS//exon       25456834//24981863//27773535 chr2:179701912-179701913(-) m6A CDS//exon       25456834//24981863//27773535 chr2:179701991-179701992(-) m6A CDS//exon       25456834//24981863//27773535//27371828 chr2:179702101-179702102(-) m6A CDS//exon       25456834//24981863//27773535//27371828 chr2:179702182-179702183(-) m6A CDS//exon       24981863//27773535//27371828 chr2:179702406-179702407(-) m6A CDS//exon       27773535 chr2:179702431-179702432(-) m6A CDS//exon       27773535 chr2:179710378-179710379(-) m6A CDS//exon       27773535 chr2:179710397-179710398(-) m6A CDS//exon       27773535 chr2:179710431-179710432(-) m6A CDS//exon       27773535 chr2:179714781-179714782(-) m6A CDS       27773535 chr2:179714844-179714845(-) m6A CDS       27773535 chr2:179714874-179714875(-) m6A CDS       27773535 chr2:179733915-179733916(-) m6A CDS       24981863 chr2:179733937-179733938(-) m6A CDS       24981863 chr2:179736261-179736262(-) m6A CDS       27773535 chr2:179736895-179736896(-) m6A CDS       27773535 chr2:179736952-179736953(-) m6A CDS       27773535 chr2:179736974-179736975(-) m6A CDS       27773535 chr2:179736986-179736987(-) m6A CDS       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-UL36-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	CCDC141	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL36-5p
Interactor2: CCDC141

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg