Detail Information

Basic Information:


  VIRBase ID:  

VHID00221022

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL36-5p:           CDC42EP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL36-5p CDC42EP3
miRBase
Accession/Entrez ID		 MIMAT0001576 10602
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - BORG2//CEP3//UB1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CDC42EP3
chr2:37879890(-) A-I      intronic
chr2:37879972(-) A-I      intronic
chr2:37880012(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CDC42EP3
chr2:37879808(-) T-C intron -    22484847
chr2:37879899(-) T-C intron -    22484847
chr2:37879969(-) T-C intron -    22484847
chr2:37879972(-) A-G intron -    22484847
chr2:37879989(-) A-G intron -    22484847
chr2:37890149(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CDC42EP3
chr2:37871192-37871193(-) m6A 3'UTR       24981863
chr2:37871432-37871433(-) m6A 3'UTR       24981863
chr2:37871469-37871470(-) m6A 3'UTR       24981863
chr2:37871537-37871538(-) m6A 3'UTR       24981863
chr2:37872466-37872467(-) m6A 3'UTR       24981863
chr2:37872488-37872489(-) m6A 3'UTR       24209618//24981863//26404942//22608085
chr2:37872541-37872542(-) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr2:37872613-37872614(-) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr2:37872623-37872624(-) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr2:37872692-37872693(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27371828//22575960//22608085
chr2:37872775-37872776(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:37872788-37872789(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:37872803-37872804(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:37872923-37872924(-) m6A 3'UTR       24284625//24209618//24981863//28052920//22608085
chr2:37873078-37873079(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr2:37873122-37873123(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr2:37873148-37873149(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr2:37873173-37873174(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr2:37873224-37873225(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr2:37873240-37873241(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr2:37873337-37873338(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr2:37873455-37873456(-) m6A CDS       24284625//24209618//24981863//26404942//22608085
chr2:37873524-37873525(-) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr2:37873545-37873546(-) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr2:37873620-37873621(-) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr2:37873659-37873660(-) m6A CDS       24284625//24209618//24981863//28052920//22608085
chr2:37873667-37873668(-) m6A CDS       24284625//24209618//24981863//28052920//22608085
chr2:37873717-37873718(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22608085
chr2:37873747-37873748(-) m6A 5'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr2:37873797-37873798(-) m6A 5'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr2:37873942-37873943(-) m6A 5'UTR       24284625//24209618
chr2:37898653-37898654(-) m6A 5'UTR//intron       24981863//27371828
chr2:37898728-37898729(-) m6A 5'UTR//intron       24981863//27371828//27773536
chr2:37898753-37898754(-) m6A 5'UTR//intron       24981863//27371828//27773536
chr2:37899106-37899107(-) m6A 5'UTR//intron       25456834//24981863
chr2:37899312-37899313(-) m6A 5'UTR//intron       25456834//24981863//27773536
chr2:37899525-37899526(-) m6A 5'UTR//intron       -
chr2:37911640-37911641(-) m6A exon//intron       25456834//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-UL36-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
CDC42EP3
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL36-5p
Interactor2: CDC42EP3

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

Starting a new search, please wait ...