Detail Information

Basic Information:


  VIRBase ID:  

VHID00220973

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL36-5p:           DDX39B:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL36-5p DDX39B
miRBase
Accession/Entrez ID		 MIMAT0001576 7919
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - BAT1//D6S81E//UAP56

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DDX39B
chr6:31505729(-) A-I      intronic
chr6:31505774(-) A-I      intronic
chr6:31505587(-) A-I      intronic
chr6:31505596(-) A-I      intronic
chr6:31505621(-) A-I      intronic
chr6:31504797(-) A-I      intronic
chr6:31505037(-) A-I      intronic
chr6:31505650(-) A-I      intronic
chr6:31506071(-) A-I      intronic
chr6:31506206(-) A-I      intronic
chr6:31506152(-) A-I      intronic
chr6:31506145(-) A-I      intronic
chr6:31506097(-) A-I      intronic
chr6:31506126(-) A-I      intronic
chr6:31506205(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DDX39B
chr6:31498019-31498020(-) m6A 3'UTR//exon       24981863//27773535
chr6:31498031-31498032(-) m6A 3'UTR//exon       24981863//27773535
chr6:31498070-31498071(-) m6A 3'UTR//exon       24981863//27773535
chr6:31498140-31498141(-) m6A 3'UTR//exon       27773535
chr6:31498163-31498164(-) m6A 3'UTR//exon       27773535
chr6:31498199-31498200(-) Cm 3'UTR//exon       -
chr6:31498206-31498207(-) m6A 3'UTR//exon       27773535
chr6:31498222-31498223(-) m6A 3'UTR//CDS//exon       27773535
chr6:31498325-31498326(-) m6A exon//intron       27773535
chr6:31498569-31498570(-) m6A 3'UTR//CDS//exon//intron       27773535
chr6:31498881-31498882(-) m6A 3'UTR//CDS//exon       22575960
chr6:31498896-31498897(-) m6A CDS//exon       22575960
chr6:31499117-31499118(-) m6A CDS//exon       27773535//22575960
chr6:31499227-31499228(-) m6A exon//intron       27773535
chr6:31499265-31499266(-) m6A exon//intron       27773535
chr6:31500603-31500604(-) Am CDS//exon       -
chr6:31500854-31500855(-) m6A exon//intron       -
chr6:31502272-31502273(-) m6A CDS//exon//intron       26404942//27773535
chr6:31502394-31502395(-) m6A exon//intron       27773535
chr6:31502430-31502431(-) m6A exon//intron       27773535
chr6:31502435-31502436(-) m6A exon//intron       27773535
chr6:31502455-31502456(-) m6A exon//intron       24284625//27773535
chr6:31502556-31502557(-) m6A exon//intron       24284625//27773535//22575960
chr6:31502702-31502703(-) m6A exon//intron       24284625//24981863//27773535//27371828//22575960
chr6:31502738-31502739(-) m6A exon//intron       24284625//24981863//26404942//27773535//27371828//22575960
chr6:31502874-31502875(-) m6A exon//intron       24981863//26404942//27773535
chr6:31502938-31502939(-) m6A exon//intron       24981863//26404942//27773535//22575960
chr6:31502948-31502949(-) m6A exon//intron       24981863//26404942//27773535//22575960
chr6:31502984-31502985(-) m6A exon//intron       24981863//26404942//27773535//22575960
chr6:31503000-31503001(-) m6A exon//intron       24981863//26404942//27773535//22575960
chr6:31503068-31503069(-) m6A exon//intron       24981863//27773535
chr6:31504157-31504158(-) Tm intron       -
chr6:31506976-31506977(-) m6A CDS//exon//intron       22575960
chr6:31508251-31508252(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960
chr6:31508268-31508269(-) Am CDS//exon       -
chr6:31508274-31508275(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960
chr6:31508289-31508290(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960
chr6:31508352-31508353(-) m6A 5'UTR//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr6:31508512-31508513(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:31508911-31508912(-) Tm exon//intron       -
chr6:31510067-31510068(-) m6A 5'UTR//exon       24981863
chr6:31510082-31510083(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-UL36-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
DDX39B
Chromatin HeLa-S3 cells|K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm HeLa-S3 cells|K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL36-5p
Interactor2: DDX39B

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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