Detail Information

Basic Information:


  VIRBase ID:  

VHID00220870

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL36-5p:           ATP1B1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL36-5p ATP1B1
miRBase
Accession/Entrez ID		 MIMAT0001576 481
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - ATP1B

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ATP1B1
chr1:169101893(+) A-I      3'UTR
chr1:169101919(+) A-I      3'UTR
chr1:169101915(+) A-I      3'UTR
chr1:169101877(+) A-I      3'UTR
chr1:169101878(+) A-I      3'UTR
chr1:169084286(+) A-I      intronic
chr1:169084262(+) A-I      intronic
chr1:169101928(+) A-I      3'UTR
chr1:169084272(+) A-I      intronic
chr1:169101880(+) A-I      3'UTR
chr1:169101908(+) A-I      3'UTR
chr1:169101869(+) A-I      3'UTR
chr1:169084266(+) A-I      intronic
chr1:169084256(+) A-I      intronic
chr1:169101871(+) A-I      3'UTR
chr1:169101873(+) A-I      3'UTR
chr1:169101923(+) A-I      3'UTR
chr1:169084606(+) A-I      intronic
chr1:169084012(+) A-I      intronic
chr1:169084007(+) A-I      intronic
chr1:169085860(+) A-I      intronic
chr1:169084235(+) A-I      intronic
chr1:169084767(+) A-I      intronic
chr1:169086039(+) A-I      intronic
chr1:169084343(+) A-I      intronic
chr1:169093045(+) A-I      intronic
chr1:169093039(+) A-I      intronic
chr1:169086034(+) A-I      intronic
chr1:169084752(+) A-I      intronic
chr1:169084029(+) A-I      intronic
chr1:169086021(+) A-I      intronic
chr1:169084244(+) A-I      intronic
chr1:169084608(+) A-I      intronic
chr1:169084243(+) A-I      intronic
chr1:169093030(+) A-I      intronic
chr1:169084239(+) A-I      intronic
chr1:169084194(+) A-I      intronic
chr1:169084787(+) A-I      intronic
chr1:169084428(+) A-I      intronic
chr1:169084259(+) A-I      intronic
chr1:169084162(+) A-I      intronic
chr1:169084809(+) A-I      intronic
chr1:169084308(+) A-I      intronic
chr1:169084412(+) A-I      intronic
chr1:169084344(+) A-I      intronic
chr1:169084789(+) A-I      intronic
chr1:169085827(+) A-I      intronic
chr1:169084368(+) A-I      intronic
chr1:169084006(+) A-I      intronic
chr1:169084716(+) A-I      intronic
chr1:169084245(+) A-I      intronic
chr1:169084770(+) A-I      intronic
chr1:169092892(+) A-I      intronic
chr1:169090863(+) A-I      intronic
chr1:169084237(+) A-I      intronic
chr1:169084807(+) A-I      intronic
chr1:169093099(+) A-I      intronic
chr1:169084276(+) A-I      intronic
chr1:169084375(+) A-I      intronic
chr1:169082404(+) A-I      intronic
chr1:169084753(+) A-I      intronic
chr1:169083993(+) A-I      intronic
chr1:169084687(+) A-I      intronic
chr1:169093127(+) A-I      intronic
chr1:169093148(+) A-I      intronic
chr1:169084661(+) A-I      intronic
chr1:169093048(+) A-I      intronic
chr1:169097395(+) A-I      intronic
chr1:169084686(+) A-I      intronic
chr1:169084203(+) A-I      intronic
chr1:169084312(+) A-I      intronic
chr1:169084329(+) A-I      intronic
chr1:169098914(+) A-I      intronic
chr1:169084152(+) A-I      intronic
chr1:169084388(+) A-I      intronic
chr1:169084211(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ATP1B1
chr1:169097395(+) A-I intron -    21960545
chr1:169082346(+) T-C intron -    22484847
chr1:169084152(+) A-G intron -    22484847
chr1:169084194(+) A-G intron -    22484847
chr1:169084237(+) A-G intron -    22484847
chr1:169084239(+) A-G intron -    22484847
chr1:169084687(+) A-G intron -    22484847
chr1:169084716(+) A-G intron -    22484847
chr1:169084753(+) A-G intron -    22484847
chr1:169084787(+) A-G intron -    22484847
chr1:169084789(+) A-G intron -    22484847
chr1:169084807(+) A-G intron -    22484847
chr1:169084809(+) A-G intron -    22484847
chr1:169085811(+) T-C intron -    22484847
chr1:169093099(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ATP1B1
chr1:169075014-169075015(+) m6A 5'UTR       24284625//24981863
chr1:169075765-169075766(+) m6A 5'UTR       24284625//24209618//24981863//22575960
chr1:169076038-169076039(+) m6A 5'UTR       24209618//24981863//26404942//27773536//22575960
chr1:169076119-169076120(+) m6A CDS       26404942//22575960
chr1:169076148-169076149(+) m6A CDS       26404942//22575960
chr1:169080666-169080667(+) m6A 5'UTR//CDS       26404942
chr1:169080718-169080719(+) m6A CDS       26404942
chr1:169094150-169094151(+) m6A CDS       26404942//27773535
chr1:169094205-169094206(+) m6A CDS       26404942//27773535
chr1:169096474-169096475(+) m6A CDS       26404942//27773535
chr1:169096491-169096492(+) m6A CDS       26404942//27773535
chr1:169096574-169096575(+) m6A CDS       26404942//27773535
chr1:169096597-169096598(+) m6A CDS       26404942//27773535
chr1:169096639-169096640(+) m6A CDS       26404942//27773535
chr1:169099271-169099272(+) m6A CDS       24284625//26404942//27773535
chr1:169100573-169100574(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:169100624-169100625(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:169100686-169100687(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:169100725-169100726(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:169100746-169100747(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:169100849-169100850(+) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//22608085
chr1:169100855-169100856(+) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//22608085
chr1:169100870-169100871(+) m6A 3'UTR       24981863//26404942//27773535//22608085
chr1:169100891-169100892(+) m6A 3'UTR       24981863//26404942//27773535//22608085
chr1:169101757-169101758(+) m6A 3'UTR       27773535
chr1:169101795-169101796(+) m6A 3'UTR       27773535
chr1:169101826-169101827(+) m6A 3'UTR       27773535
chr1:169101930-169101931(+) m6A 3'UTR       27773535
chr1:169101937-169101938(+) m6A 3'UTR       27773535
chr1:169101952-169101953(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-UL36-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
ATP1B1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL36-5p
Interactor2: ATP1B1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

Starting a new search, please wait ...