Basic Information:

  VIRBase ID:  

VHID00220744

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          SOGA3:  NM_001012279     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	SOGA3
miRBase Accession/Entrez ID	MIMAT0001575	387104
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C6orf174//dJ403A15.3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SOGA3	chr6:127800405(-) A-I      intronic chr6:127789035(-) A-I      intronic chr6:127828784(-) A-I      intronic chr6:127828807(-) A-I      intronic chr6:127789047(-) A-I      intronic chr6:127789179(-) A-I      intronic chr6:127782457(-) A-I      intronic chr6:127789110(-) A-I      intronic chr6:127782459(-) A-I      intronic chr6:127784954(-) A-I      intronic chr6:127789142(-) A-I      intronic chr6:127789169(-) A-I      intronic chr6:127789215(-) A-I      intronic chr6:127789289(-) A-I      intronic chr6:127784979(-) A-I      intronic chr6:127827906(-) A-I      intronic chr6:127827864(-) A-I      intronic chr6:127828942(-) A-I      intronic chr6:127787257(-) A-I      intronic chr6:127828888(-) A-I      intronic chr6:127812894(-) A-I      intronic chr6:127813939(-) A-I      intronic chr6:127827854(-) A-I      intronic chr6:127789102(-) A-I      intronic chr6:127827929(-) A-I      intronic chr6:127795465(-) A-I      intronic chr6:127784105(-) A-I      intronic chr6:127787320(-) A-I      intronic chr6:127828925(-) A-I      intronic chr6:127795561(-) A-I      intronic chr6:127827919(-) A-I      intronic chr6:127787230(-) A-I      intronic chr6:127795485(-) A-I      intronic chr6:127795490(-) A-I      intronic chr6:127813940(-) A-I      intronic chr6:127827905(-) A-I      intronic chr6:127782258(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SOGA3	chr6:127789102(-) A-G intron -    22484847 chr6:127827794(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOGA3	chr6:127793985-127793986(-) m6A 3'UTR       22608085 chr6:127794240-127794241(-) m6A 3'UTR       24981863//22608085 chr6:127794263-127794264(-) m6A 3'UTR       24981863//22608085 chr6:127794304-127794305(-) m6A 3'UTR       24981863//22608085 chr6:127794313-127794314(-) m6A 3'UTR       24981863//22608085 chr6:127796511-127796512(-) m6A CDS       25456834//24981863//27371828//27773536//22608085 chr6:127796608-127796609(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127796618-127796619(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127796688-127796689(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127796720-127796721(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127796993-127796994(-) m6A CDS       24209618//24981863//27773536 chr6:127797078-127797079(-) m6A CDS       24209618//24981863//27773536 chr6:127797161-127797162(-) m6A CDS       24209618//24981863//27371828//27773536//22608085 chr6:127797316-127797317(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127797335-127797336(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127797349-127797350(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127797467-127797468(-) m6A CDS       24209618//25456834//24981863//27371828//22608085 chr6:127797508-127797509(-) m6A CDS       24209618//25456834//24981863//22608085 chr6:127797518-127797519(-) m6A CDS       24209618//25456834//24981863//22608085 chr6:127797608-127797609(-) m6A CDS       24981863//27371828//22608085 chr6:127804068-127804069(-) m6A CDS       24981863//27371828//22608085 chr6:127834053-127834054(-) m6A CDS       24981863//27371828//22608085 chr6:127834107-127834108(-) m6A CDS       24981863//27371828//22608085 chr6:127834133-127834134(-) m6A CDS       24981863//22608085 chr6:127834170-127834171(-) m6A CDS       24981863//22608085 chr6:127835974-127835975(-) m6A CDS       24981863//27773536//22608085 chr6:127836017-127836018(-) m6A CDS       25456834//24981863//27773536//22608085 chr6:127836079-127836080(-) m6A CDS       25456834//24981863//27773536//22608085 chr6:127836148-127836149(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127836170-127836171(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127836666-127836667(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22608085 chr6:127836855-127836856(-) m6A CDS       24209618//27773536 chr6:127837061-127837062(-) m6A CDS       25456834//24981863//27371828//27773536 chr6:127837074-127837075(-) m6A CDS       25456834//24981863//27371828//27773536 chr6:127837083-127837084(-) m6A CDS       25456834//24981863//27371828//27773536 chr6:127837282-127837283(-) m6A CDS       25456834//24981863//27773536 chr6:127837291-127837292(-) m6A CDS       25456834//24981863//27773536 chr6:127837336-127837337(-) m6A CDS       25456834//24981863//27773536 chr6:127837506-127837507(-) m6A CDS       25456834//24981863//27773536 chr6:127837561-127837562(-) m6A CDS       25456834//24981863 chr6:127837602-127837603(-) m6A CDS       24209618//25456834//24981863 chr6:127837619-127837620(-) m6A CDS       24209618//25456834//24981863 chr6:127837627-127837628(-) m6A CDS       24209618//25456834//24981863 chr6:127839741-127839742(-) m6A 5'UTR       24981863 chr6:127839801-127839802(-) m6A 5'UTR       25456834//24981863 chr6:127839833-127839834(-) m6A 5'UTR       25456834//24981863 chr6:127839897-127839898(-) m6A 5'UTR       25456834//24981863 chr6:127839978-127839979(-) m6A 5'UTR       24981863 chr6:127840067-127840068(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SOGA3	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: SOGA3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg