Basic Information:

  VIRBase ID:  

VHID00220680

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          SREK1IP1:  NM_173829     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	SREK1IP1
miRBase Accession/Entrez ID	MIMAT0001575	285672
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	P18SRP//SFRS12IP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SREK1IP1	chr5:64053115(-) A-I      intronic chr5:64021825(-) A-I      intronic chr5:64021821(-) A-I      intronic chr5:64021922(-) A-I      intronic chr5:64021914(-) A-I      intronic chr5:64053201(-) A-I      intronic chr5:64053106(-) A-I      intronic chr5:64021916(-) A-I      intronic chr5:64053909(-) A-I      intronic chr5:64053949(-) A-I      intronic chr5:64021831(-) A-I      intronic chr5:64052618(-) A-I      intronic chr5:64052586(-) A-I      intronic chr5:64053098(-) A-I      intronic chr5:64052582(-) A-I      intronic chr5:64052578(-) A-I      intronic chr5:64048090(-) A-I      intronic chr5:64022303(-) A-I      intronic chr5:64053908(-) A-I      intronic chr5:64053100(-) A-I      intronic chr5:64021897(-) A-I      intronic chr5:64053893(-) A-I      intronic chr5:64022294(-) A-I      intronic chr5:64022291(-) A-I      intronic chr5:64022229(-) A-I      intronic chr5:64021789(-) A-I      intronic chr5:64053838(-) A-I      intronic chr5:64053101(-) A-I      intronic chr5:64053217(-) A-I      intronic chr5:64053107(-) A-I      intronic chr5:64053864(-) A-I      intronic chr5:64053764(-) A-I      intronic chr5:64021901(-) A-I      intronic chr5:64043672(-) A-I      intronic chr5:64053099(-) A-I      intronic chr5:64052526(-) A-I      intronic chr5:64053128(-) A-I      intronic chr5:64021719(-) A-I      intronic chr5:64022213(-) A-I      intronic chr5:64022351(-) A-I      intronic chr5:64043599(-) A-I      intronic chr5:64021886(-) A-I      intronic chr5:64021718(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SREK1IP1	chr5:64021830(-) A-G intron -    22484847 chr5:64022213(-) A-G intron -    22484847 chr5:64022351(-) A-G intron -    22484847 chr5:64053101(-) A-G intron -    22484847 chr5:64053107(-) A-G intron -    22484847 chr5:64053128(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SREK1IP1	chr5:64014014-64014015(-) m6A 3'UTR       27773535 chr5:64014023-64014024(-) m6A 3'UTR       27773535 chr5:64016657-64016658(-) m6A 3'UTR       27773535 chr5:64016679-64016680(-) m6A 3'UTR       27773535 chr5:64016720-64016721(-) m6A 3'UTR       27773535 chr5:64016743-64016744(-) m6A 3'UTR       27773535 chr5:64016979-64016980(-) m6A 3'UTR       24981863 chr5:64016995-64016996(-) m6A 3'UTR       24981863 chr5:64017042-64017043(-) m6A 3'UTR       24981863 chr5:64017068-64017069(-) m6A 3'UTR       24981863 chr5:64017089-64017090(-) m6A 3'UTR       24981863 chr5:64020075-64020076(-) m6A 3'UTR       27773535//22608085 chr5:64020093-64020094(-) m6A 3'UTR       27773535//22608085 chr5:64020204-64020205(-) m6A 3'UTR       24981863//27773535//22608085 chr5:64020291-64020292(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//22608085 chr5:64020351-64020352(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//22608085 chr5:64020360-64020361(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//22608085 chr5:64020370-64020371(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//22608085 chr5:64023567-64023568(-) m6A exon//intron       24981863//27773535//27371828//22608085 chr5:64023590-64023591(-) m6A exon//intron       24981863//27773535//27371828//22608085 chr5:64023906-64023907(-) m6A exon//intron       24981863//27773535//22608085 chr5:64023921-64023922(-) m6A exon//intron       24981863//27773535//22608085 chr5:64036914-64036915(-) m6A CDS//exon       24981863//27773535//22608085 chr5:64036972-64036973(-) m6A CDS//exon       24981863//27773535 chr5:64036984-64036985(-) m6A CDS//exon       24981863//27773535 chr5:64050176-64050177(-) m6A CDS//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SREK1IP1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: SREK1IP1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg