Basic Information:

  VIRBase ID:  

VHID00220679

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          RNF180:  NM_001323291     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	RNF180
miRBase Accession/Entrez ID	MIMAT0001575	285671
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RINES

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RNF180	chr5:63629068(+) A-I      intronic chr5:63524068(+) A-I      intronic chr5:63515482(+) A-I      intronic chr5:63488503(+) A-I      intronic chr5:63629069(+) A-I      intronic chr5:63632970(+) A-I      intronic chr5:63629259(+) A-I      intronic chr5:63632927(+) A-I      intronic chr5:63632967(+) A-I      intronic chr5:63633096(+) A-I      intronic chr5:63633097(+) A-I      intronic chr5:63634198(+) A-I      intronic chr5:63634233(+) A-I      intronic chr5:63634245(+) A-I      intronic chr5:63634347(+) A-I      intronic chr5:63634315(+) A-I      intronic chr5:63634299(+) A-I      intronic chr5:63518632(+) A-I      intronic chr5:63634283(+) A-I      intronic chr5:63632958(+) A-I      intronic chr5:63632940(+) A-I      intronic chr5:63632936(+) A-I      intronic chr5:63632928(+) A-I      intronic chr5:63629131(+) A-I      intronic chr5:63629240(+) A-I      intronic chr5:63634457(+) A-I      intronic chr5:63634298(+) A-I      intronic chr5:63634444(+) A-I      intronic chr5:63634284(+) A-I      intronic chr5:63634274(+) A-I      intronic chr5:63634223(+) A-I      intronic chr5:63634441(+) A-I      intronic chr5:63634432(+) A-I      intronic chr5:63634403(+) A-I      intronic chr5:63629130(+) A-I      intronic chr5:63629082(+) A-I      intronic chr5:63629024(+) A-I      intronic chr5:63606938(+) A-I      intronic chr5:63634358(+) A-I      intronic chr5:63634355(+) A-I      intronic chr5:63633110(+) A-I      intronic chr5:63633034(+) A-I      intronic chr5:63524878(+) A-I      intronic chr5:63524218(+) A-I      intronic chr5:63524159(+) A-I      intronic chr5:63632990(+) A-I      intronic chr5:63629053(+) A-I      intronic chr5:63524884(+) A-I      intronic chr5:63666328(+) A-I      3'UTR chr5:63633104(+) A-I      intronic chr5:63634207(+) A-I      intronic chr5:63629194(+) A-I      intronic chr5:63530106(+) A-I      intronic chr5:63633026(+) A-I      intronic chr5:63633065(+) A-I      intronic chr5:63530842(+) A-I      intronic chr5:63513643(+) A-I      intronic chr5:63634445(+) A-I      intronic chr5:63634351(+) A-I      intronic chr5:63633020(+) A-I      intronic chr5:63652029(+) A-I      intronic chr5:63524230(+) A-I      intronic chr5:63555540(+) A-I      intronic chr5:63515531(+) A-I      intronic chr5:63530105(+) A-I      intronic chr5:63513581(+) A-I      3'UTR chr5:63513518(+) A-I      3'UTR chr5:63513601(+) A-I      3'UTR chr5:63494919(+) A-I      intronic chr5:63530172(+) A-I      intronic chr5:63651888(+) A-I      intronic chr5:63629134(+) A-I      intronic chr5:63632953(+) A-I      intronic chr5:63530090(+) A-I      intronic chr5:63530507(+) A-I      intronic chr5:63632894(+) A-I      intronic chr5:63652009(+) A-I      intronic chr5:63633098(+) A-I      intronic chr5:63515483(+) A-I      intronic chr5:63652030(+) A-I      intronic chr5:63513709(+) A-I      intronic chr5:63632882(+) A-I      intronic chr5:63530633(+) A-I      intronic chr5:63555730(+) A-I      intronic chr5:63524888(+) A-I      intronic chr5:63587381(+) A-I      intronic chr5:63513632(+) A-I      intronic chr5:63524285(+) A-I      intronic chr5:63634212(+) A-I      intronic chr5:63634341(+) A-I      intronic chr5:63634213(+) A-I      intronic chr5:63632945(+) A-I      intronic chr5:63524157(+) A-I      intronic chr5:63524261(+) A-I      intronic chr5:63524954(+) A-I      intronic chr5:63629174(+) A-I      intronic chr5:63632870(+) A-I      intronic chr5:63524849(+) A-I      intronic chr5:63513723(+) A-I      intronic chr5:63634407(+) A-I      intronic chr5:63629144(+) A-I      intronic chr5:63473777(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RNF180	chr5:63496649(+) A-I exon CDS    15342557 chr5:63513518(+) A-I intron -    15342557 chr5:63513581(+) A-I intron -    15342557 chr5:63513591(+) A-I intron -    15342557 chr5:63513595(+) A-I intron -    15342557 chr5:63513598(+) A-I intron -    15342557 chr5:63513601(+) A-I intron -    15342557 chr5:63530140(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RNF180	chr5:63509743-63509744(+) m6A CDS       24209618 chr5:63509764-63509765(+) m6A CDS       24209618//24981863 chr5:63509853-63509854(+) m6A CDS       24209618//24981863 chr5:63509866-63509867(+) m6A CDS       24209618//24981863 chr5:63509906-63509907(+) m6A CDS       24209618//24981863 chr5:63509923-63509924(+) m6A CDS       24209618//24981863 chr5:63509933-63509934(+) m6A CDS       24209618 chr5:63510056-63510057(+) m6A CDS       - chr5:63510062-63510063(+) m6A CDS       - chr5:63510153-63510154(+) m6A CDS       - chr5:63510192-63510193(+) m6A CDS       - chr5:63510219-63510220(+) m6A CDS       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RNF180	Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: RNF180

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg