Detail Information

Basic Information:


  VIRBase ID:  

VHID00220674

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:           C3orf70:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL22A-3p C3orf70
miRBase
Accession/Entrez ID		 MIMAT0001575 285382
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C3orf70
chr3:184860169(-) A-I      intronic
chr3:184851685(-) A-I      intronic
chr3:184864213(-) A-I      intronic
chr3:184801756(-) A-I      intronic
chr3:184799142(-) A-I      3'UTR
chr3:184867167(-) A-I      intronic
chr3:184867123(-) A-I      intronic
chr3:184866976(-) A-I      intronic
chr3:184854213(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C3orf70
chr3:184813601(-) A-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C3orf70
chr3:184800765-184800766(-) m6A 3'UTR       22608085
chr3:184800785-184800786(-) m6A 3'UTR       27773535//22608085
chr3:184800869-184800870(-) m6A CDS       24981863//27773535//22608085
chr3:184800911-184800912(-) m6A CDS       24209618//25456834//27773535//22608085
chr3:184800930-184800931(-) m6A CDS       24209618//27773535//22608085
chr3:184800981-184800982(-) m6A CDS       24209618//27773535//22608085
chr3:184801164-184801165(-) m6A CDS       24209618//24981863//27773535//22608085
chr3:184801238-184801239(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr3:184801269-184801270(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr3:184801277-184801278(-) m6A CDS       24209618//25456834//24981863//27773535//22608085
chr3:184801316-184801317(-) m6A CDS       25456834//27773535
chr3:184870515-184870516(-) m6A CDS       25456834
chr3:184870560-184870561(-) m6A CDS       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate C3orf70
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL22A-3p
Interactor2: C3orf70

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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