Basic Information:

  VIRBase ID:  

VHID00220666

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          RIMKLA:  NM_173642     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	RIMKLA
miRBase Accession/Entrez ID	MIMAT0001575	284716
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAM80A//NAAGS//NAAGS-II//NAAGS2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RIMKLA	chr1:42855236(+) A-I      intronic chr1:42855417(+) A-I      intronic chr1:42855419(+) A-I      intronic chr1:42855445(+) A-I      intronic chr1:42855971(+) A-I      intronic chr1:42855961(+) A-I      intronic chr1:42855760(+) A-I      intronic chr1:42855362(+) A-I      intronic chr1:42855364(+) A-I      intronic chr1:42855365(+) A-I      intronic chr1:42855426(+) A-I      intronic chr1:42855435(+) A-I      intronic chr1:42859559(+) A-I      intronic chr1:42874650(+) A-I      intronic chr1:42877183(+) A-I      intronic chr1:42877384(+) A-I      intronic chr1:42878674(+) A-I      intronic chr1:42878684(+) A-I      intronic chr1:42878694(+) A-I      intronic chr1:42859585(+) A-I      intronic chr1:42859595(+) A-I      intronic chr1:42859635(+) A-I      intronic chr1:42859639(+) A-I      intronic chr1:42860507(+) A-I      intronic chr1:42860525(+) A-I      intronic chr1:42861729(+) A-I      intronic chr1:42861744(+) A-I      intronic chr1:42861745(+) A-I      intronic chr1:42874192(+) A-I      intronic chr1:42874360(+) A-I      intronic chr1:42852436(+) A-I      intronic chr1:42861739(+) A-I      intronic chr1:42851662(+) A-I      intronic chr1:42851779(+) A-I      intronic chr1:42851841(+) A-I      intronic chr1:42852397(+) A-I      intronic chr1:42852400(+) A-I      intronic chr1:42855433(+) A-I      intronic chr1:42852437(+) A-I      intronic chr1:42854144(+) A-I      intronic chr1:42874210(+) A-I      intronic chr1:42855854(+) A-I      intronic chr1:42874272(+) A-I      intronic chr1:42855486(+) A-I      intronic chr1:42858498(+) A-I      intronic chr1:42860547(+) A-I      intronic chr1:42855918(+) A-I      intronic chr1:42874719(+) A-I      intronic chr1:42855914(+) A-I      intronic chr1:42879611(+) A-I      intronic chr1:42855418(+) A-I      intronic chr1:42874187(+) A-I      intronic chr1:42855211(+) A-I      intronic chr1:42879125(+) A-I      intronic chr1:42876862(+) A-I      intronic chr1:42855403(+) A-I      intronic chr1:42851732(+) A-I      intronic chr1:42876870(+) A-I      intronic chr1:42851624(+) A-I      intronic chr1:42874693(+) A-I      intronic chr1:42855838(+) A-I      intronic chr1:42874774(+) A-I      intronic chr1:42874275(+) A-I      intronic chr1:42858342(+) A-I      intronic chr1:42864517(+) A-I      intronic chr1:42855848(+) A-I      intronic chr1:42852979(+) A-I      intronic chr1:42855850(+) A-I      intronic chr1:42851777(+) A-I      intronic chr1:42853929(+) A-I      intronic chr1:42874313(+) A-I      intronic chr1:42879035(+) A-I      intronic chr1:42877001(+) A-I      intronic chr1:42874718(+) A-I      intronic chr1:42851632(+) A-I      intronic chr1:42855424(+) A-I      intronic chr1:42876746(+) A-I      intronic chr1:42878987(+) A-I      intronic chr1:42851696(+) A-I      intronic chr1:42855931(+) A-I      intronic chr1:42863203(+) A-I      intronic chr1:42874222(+) A-I      intronic chr1:42876745(+) A-I      intronic chr1:42879465(+) A-I      intronic chr1:42855788(+) A-I      intronic chr1:42874736(+) A-I      intronic chr1:42883486(+) A-I      3'UTR chr1:42876723(+) A-I      intronic chr1:42855789(+) A-I      intronic chr1:42874762(+) A-I      intronic chr1:42855263(+) A-I      intronic chr1:42860508(+) A-I      intronic chr1:42874703(+) A-I      intronic chr1:42879589(+) A-I      intronic chr1:42877548(+) A-I      intronic chr1:42877017(+) A-I      intronic chr1:42875062(+) A-I      intronic chr1:42858542(+) A-I      intronic chr1:42855205(+) A-I      intronic chr1:42874147(+) A-I      intronic chr1:42876819(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RIMKLA	chr1:42851624(+) A-G intron -    22484847 chr1:42851632(+) A-G intron -    22484847 chr1:42851696(+) A-G intron -    22484847 chr1:42851732(+) A-G intron -    22484847 chr1:42851777(+) A-G intron -    22484847 chr1:42855424(+) A-G intron -    22484847 chr1:42855838(+) A-G intron -    22484847 chr1:42855848(+) A-G intron -    22484847 chr1:42855850(+) A-G intron -    22484847 chr1:42855854(+) A-G intron -    22484847 chr1:42855914(+) A-G intron -    22484847 chr1:42858542(+) A-G intron -    22484847 chr1:42860508(+) A-G intron -    22484847 chr1:42860547(+) A-G intron -    22484847 chr1:42874147(+) A-G intron -    22484847 chr1:42876746(+) A-G intron -    22484847 chr1:42877548(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RIMKLA	chr1:42880185-42880186(+) m6A CDS       25456834//24981863//22608085 chr1:42880232-42880233(+) m6A CDS       25456834//24981863//22608085 chr1:42880358-42880359(+) m6A CDS       24209618//25456834//24981863//22608085 chr1:42880390-42880391(+) m6A CDS       25456834//24981863//22608085 chr1:42880416-42880417(+) m6A CDS       25456834//24981863//22608085 chr1:42880530-42880531(+) m6A CDS       24981863//22608085 chr1:42880593-42880594(+) m6A CDS       24981863//22608085 chr1:42880635-42880636(+) m6A CDS       24981863//22608085 chr1:42880670-42880671(+) m6A 3'UTR       24981863//22608085 chr1:42880717-42880718(+) m6A 3'UTR       24981863//22608085 chr1:42880743-42880744(+) m6A 3'UTR       24981863//22608085 chr1:42880824-42880825(+) m6A 3'UTR       25456834//24981863//22608085 chr1:42880836-42880837(+) m6A 3'UTR       25456834//24981863//22608085 chr1:42880846-42880847(+) m6A 3'UTR       25456834//24981863//22608085 chr1:42880872-42880873(+) m6A 3'UTR       25456834//24981863//22608085 chr1:42880956-42880957(+) m6A 3'UTR       25456834//24981863//22608085 chr1:42881089-42881090(+) m6A 3'UTR       25456834//24981863//22608085 chr1:42881100-42881101(+) m6A 3'UTR       25456834//24981863//22608085 chr1:42881321-42881322(+) m6A 3'UTR       22608085 chr1:42881457-42881458(+) m6A 3'UTR       24981863//22608085 chr1:42881474-42881475(+) m6A 3'UTR       24981863//22608085 chr1:42881561-42881562(+) m6A 3'UTR       22608085 chr1:42882157-42882158(+) Y 3'UTR       26075521 chr1:42885574-42885575(+) m6A 3'UTR       - chr1:42885596-42885597(+) m6A 3'UTR       - chr1:42887019-42887020(+) m6A 3'UTR       - chr1:42887081-42887082(+) m6A 3'UTR       - chr1:42887109-42887110(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RIMKLA	Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: RIMKLA

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg