Basic Information:

  VIRBase ID:  

VHID00220612

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          SCUBE3:  NM_152753     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	SCUBE3
miRBase Accession/Entrez ID	MIMAT0001575	222663
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CEGF3//SSFSC2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SCUBE3	chr6:35190696(+) A-I      intronic chr6:35219067(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SCUBE3	chr6:35190929(+) A-I intron -    22327324 chr6:35190929(+) T-C intron -    22484847 chr6:35192170(+) T-C intron -    22484847 chr6:35192239(+) T-C intron -    22484847 chr6:35192242(+) T-C intron -    22484847 chr6:35192245(+) T-C intron -    22484847 chr6:35192283(+) T-C intron -    22484847 chr6:35194336(+) T-C intron -    22484847 chr6:35197130(+) T-C intron -    22484847 chr6:35197131(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SCUBE3	chr6:35216403-35216404(+) m6A CDS       24981863 chr6:35216499-35216500(+) m6A 3'UTR       24981863 chr6:35216521-35216522(+) m6A 3'UTR       24981863 chr6:35216560-35216561(+) m6A 3'UTR       24981863 chr6:35216567-35216568(+) m6A 3'UTR       24981863 chr6:35216614-35216615(+) m6A 3'UTR       24981863 chr6:35217154-35217155(+) m6A 3'UTR       24981863 chr6:35217226-35217227(+) m6A 3'UTR       24981863 chr6:35217242-35217243(+) m6A 3'UTR       24981863 chr6:35217248-35217249(+) m6A 3'UTR       24981863 chr6:35217281-35217282(+) m6A 3'UTR       24981863 chr6:35217310-35217311(+) m6A 3'UTR       24981863 chr6:35217315-35217316(+) m6A 3'UTR       24981863 chr6:35217322-35217323(+) m6A 3'UTR       24981863 chr6:35217343-35217344(+) m6A 3'UTR       24981863 chr6:35217822-35217823(+) m6A 3'UTR       27773535 chr6:35217969-35217970(+) m6A 3'UTR       24981863 chr6:35217984-35217985(+) m6A 3'UTR       24981863 chr6:35218027-35218028(+) m6A 3'UTR       24981863 chr6:35218053-35218054(+) m6A 3'UTR       24981863 chr6:35218087-35218088(+) m6A 3'UTR       24981863 chr6:35218144-35218145(+) m6A 3'UTR       24981863 chr6:35218150-35218151(+) m6A 3'UTR       24981863 chr6:35218195-35218196(+) m6A 3'UTR       24981863 chr6:35218221-35218222(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SCUBE3	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: SCUBE3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg