Detail Information

Basic Information:


  VIRBase ID:  

VHID00220377

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:           ARAP2:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL22A-3p ARAP2
miRBase
Accession/Entrez ID		 MIMAT0001575 116984
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CENTD1//PARX

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ARAP2
chr4:36109707(-) A-I      intronic
chr4:36202024(-) A-I      intronic
chr4:36202015(-) A-I      intronic
chr4:36202006(-) A-I      intronic
chr4:36201989(-) A-I      intronic
chr4:36201970(-) A-I      intronic
chr4:36095440(-) A-I      intronic
chr4:36095398(-) A-I      intronic
chr4:36202016(-) A-I      intronic
chr4:36202071(-) A-I      intronic
chr4:36201107(-) A-I      intronic
chr4:36172042(-) A-I      intronic
chr4:36172038(-) A-I      intronic
chr4:36202072(-) A-I      intronic
chr4:36201052(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ARAP2
chr4:36068312(-) A-I exon 3'UTR    19478186
chr4:36077845(-) A-I intron -    22327324
chr4:36077845(-) A-G intron -    22484847
chr4:36094973(-) A-G intron -    22484847
chr4:36094974(-) A-G intron -    22484847
chr4:36095470(-) A-G intron -    22484847
chr4:36098003(-) C-T intron -    22484847
chr4:36172038(-) A-G intron -    22484847
chr4:36205130(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ARAP2
chr4:36069014-36069015(-) m6A 3'UTR//intron       27773535
chr4:36069129-36069130(-) m6A 3'UTR//intron       27773535
chr4:36069160-36069161(-) m6A 3'UTR//intron       27773535
chr4:36069453-36069454(-) m6A 3'UTR//intron       26404942
chr4:36069458-36069459(-) m6A 3'UTR//intron       26404942
chr4:36069569-36069570(-) m6A CDS//intron       24209618//24981863//26404942//27773535//22608085
chr4:36069597-36069598(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr4:36069634-36069635(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr4:36069658-36069659(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr4:36069665-36069666(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr4:36069677-36069678(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr4:36069730-36069731(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr4:36069756-36069757(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr4:36069777-36069778(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr4:36069838-36069839(-) m6A CDS//intron       22608085
chr4:36069885-36069886(-) m6A CDS//intron       -
chr4:36211016-36211017(-) m6A CDS//intron       27773535
chr4:36212025-36212026(-) m6A CDS//exon       27773535//22608085
chr4:36212167-36212168(-) m6A 5'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr4:36212189-36212190(-) m6A 5'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr4:36212275-36212276(-) m6A 5'UTR//CDS//exon       24284625//24981863//26404942//27773535//22608085
chr4:36212290-36212291(-) m6A 5'UTR//CDS//exon       24981863//26404942//22608085
chr4:36212296-36212297(-) m6A 5'UTR//CDS//exon       24981863//26404942//22608085
chr4:36212329-36212330(-) m6A 5'UTR//CDS//exon       26404942//22608085
chr4:36214038-36214039(-) m6A CDS//exon       22608085
chr4:36230411-36230412(-) m6A CDS//exon       24209618//24981863//26404942//27773535//22608085
chr4:36230429-36230430(-) m6A CDS//exon       24209618//24981863//26404942//27773535//22608085
chr4:36230470-36230471(-) m6A CDS//exon       24209618//24981863//27773535//22608085
chr4:36230522-36230523(-) m6A CDS//exon       24981863//27773535//22608085
chr4:36230529-36230530(-) m6A CDS//exon       24981863//27773535//22608085
chr4:36230552-36230553(-) m6A CDS//exon       24981863//27773535//22608085
chr4:36230634-36230635(-) m6A CDS//exon       24981863//22608085
chr4:36230722-36230723(-) m6A CDS//exon       24284625//24981863//22608085
chr4:36230744-36230745(-) m6A CDS//exon       24284625//24981863//22608085
chr4:36230768-36230769(-) m6A CDS//exon       24284625//24981863//22608085
chr4:36230793-36230794(-) m6A CDS//exon       24284625//24981863//26404942//22608085
chr4:36230861-36230862(-) m6A CDS//exon       24981863//26404942//22608085
chr4:36230922-36230923(-) m6A CDS//exon       26404942//22608085
chr4:36230998-36230999(-) m6A CDS//exon       24284625//26404942//22608085
chr4:36245540-36245541(-) m6A 5'UTR//intron       27773536
chr4:36245548-36245549(-) m6A 5'UTR//intron       27773536
chr4:36245820-36245821(-) m6A 5'UTR       27773536
chr4:36245889-36245890(-) m6A 5'UTR       27773536
chr4:36245932-36245933(-) m6A 5'UTR       27773536
chr4:36245945-36245946(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ARAP2
Exosome Blood     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL22A-3p
Interactor2: ARAP2

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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