Detail Information

Basic Information:


  VIRBase ID:  

VHID00220332

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:           ACTR8:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL22A-3p ACTR8
miRBase
Accession/Entrez ID		 MIMAT0001575 93973
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - ARP8//hArp8//INO80N

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ACTR8
chr3:53908594(-) A-I      intronic
chr3:53908579(-) A-I      intronic
chr3:53908568(-) A-I      intronic
chr3:53910301(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ACTR8
chr3:53908566(-) A-G intron -    22484847
chr3:53908568(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ACTR8
chr3:53901549-53901550(-) m6A 3'UTR       24981863//27773535
chr3:53901588-53901589(-) m6A 3'UTR       24981863//27773535
chr3:53901601-53901602(-) m6A 3'UTR       27773535
chr3:53901612-53901613(-) m6A 3'UTR       27773535
chr3:53902357-53902358(-) m6A 3'UTR       27773535
chr3:53902484-53902485(-) m6A 3'UTR       27773535
chr3:53902514-53902515(-) m6A 3'UTR       27773535//22608085
chr3:53902533-53902534(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr3:53902578-53902579(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr3:53902603-53902604(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr3:53902617-53902618(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr3:53902634-53902635(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr3:53902690-53902691(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr3:53902711-53902712(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr3:53902718-53902719(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr3:53902820-53902821(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr3:53902881-53902882(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr3:53905220-53905221(-) m6A exon//intron       24981863
chr3:53905239-53905240(-) m6A exon//intron       24981863
chr3:53905266-53905267(-) m6A CDS//exon       24981863
chr3:53905330-53905331(-) m6A CDS//exon       24981863
chr3:53914019-53914020(-) m6A 5'UTR//CDS       27773536
chr3:53914025-53914026(-) m6A 5'UTR//CDS       27773536
chr3:53914065-53914066(-) m6A 5'UTR//CDS       27773536
chr3:53915785-53915786(-) m6A 5'UTR//intron       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ACTR8
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL22A-3p
Interactor2: ACTR8

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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