Basic Information:

  VIRBase ID:  

VHID00220209

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          SGIP1:  NM_001376534     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	SGIP1
miRBase Accession/Entrez ID	MIMAT0001575	84251
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SGIP1	chr1:67165868(+) A-I      intronic chr1:67039263(+) A-I      intronic chr1:67039253(+) A-I      intronic chr1:67039247(+) A-I      intronic chr1:67039238(+) A-I      intronic chr1:67039218(+) A-I      intronic chr1:67039211(+) A-I      intronic chr1:67165867(+) A-I      intronic chr1:67203143(+) A-I      intronic chr1:67203147(+) A-I      intronic chr1:67203156(+) A-I      intronic chr1:67203161(+) A-I      intronic chr1:67203166(+) A-I      intronic chr1:67058035(+) A-I      intronic chr1:67056348(+) A-I      intronic chr1:67056376(+) A-I      intronic chr1:67056408(+) A-I      intronic chr1:67165889(+) A-I      intronic chr1:67056258(+) A-I      intronic chr1:67056343(+) A-I      intronic chr1:67056344(+) A-I      intronic chr1:67058050(+) A-I      intronic chr1:67056342(+) A-I      intronic chr1:67171533(+) A-I      intronic chr1:67165878(+) A-I      intronic chr1:67171567(+) A-I      intronic chr1:67174795(+) A-I      intronic chr1:67056341(+) A-I      intronic chr1:67058029(+) A-I      intronic chr1:67125484(+) A-I      intronic chr1:67058051(+) A-I      intronic chr1:67058052(+) A-I      intronic chr1:67125478(+) A-I      intronic chr1:67058059(+) A-I      intronic chr1:67058081(+) A-I      intronic chr1:67203195(+) A-I      intronic chr1:67098324(+) A-I      intronic chr1:67125343(+) A-I      intronic chr1:67125391(+) A-I      intronic chr1:67125422(+) A-I      intronic chr1:67125518(+) A-I      intronic chr1:67139587(+) A-I      intronic chr1:67139730(+) A-I      intronic chr1:67139736(+) A-I      intronic chr1:67139780(+) A-I      intronic chr1:67157774(+) A-I      intronic chr1:67165834(+) A-I      intronic chr1:67165852(+) A-I      intronic chr1:67165863(+) A-I      intronic chr1:67201072(+) A-I      intronic chr1:67139622(+) A-I      intronic chr1:67186156(+) A-I      intronic chr1:67125482(+) A-I      intronic chr1:67125625(+) A-I      intronic chr1:67125315(+) A-I      intronic chr1:67125472(+) A-I      intronic chr1:67125489(+) A-I      intronic chr1:67125574(+) A-I      intronic chr1:67186396(+) A-I      intronic chr1:67201081(+) A-I      intronic chr1:67122798(+) A-I      intronic chr1:67200451(+) A-I      intronic chr1:67200321(+) A-I      intronic chr1:67169482(+) A-I      intronic chr1:67058785(+) A-I      intronic chr1:67057010(+) A-I      intronic chr1:67058775(+) A-I      intronic chr1:67035193(+) A-I      intronic chr1:67125464(+) A-I      intronic chr1:67122736(+) A-I      intronic chr1:67044419(+) A-I      intronic chr1:67111604(+) A-I      intronic chr1:67125351(+) A-I      intronic chr1:67060217(+) A-I      intronic chr1:67058882(+) A-I      intronic chr1:67125319(+) A-I      intronic chr1:67125514(+) A-I      intronic chr1:67187209(+) A-I      intronic chr1:67125386(+) A-I      intronic chr1:67186397(+) A-I      intronic chr1:67111624(+) A-I      intronic chr1:67125352(+) A-I      intronic chr1:67122579(+) A-I      intronic chr1:67122752(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SGIP1	chr1:67096190(+) A-I intron -    15342557

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SGIP1	chr1:66999329-66999330(+) m6A 5'UTR//exon//intron       24981863 chr1:67091580-67091581(+) m6A CDS//exon       24981863 chr1:67208820-67208821(+) m6A 3'UTR       24981863 chr1:67208835-67208836(+) m6A 3'UTR       24981863 chr1:67208862-67208863(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SGIP1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: SGIP1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg