Basic Information:

  VIRBase ID:  

VHID00220192

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          SPRTN:  NM_032018     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	SPRTN
miRBase Accession/Entrez ID	MIMAT0001575	83932
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf124//DVC1//PRO4323//spartan

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SPRTN	chr1:231485608(+) A-I      intronic chr1:231483319(+) A-I      intronic chr1:231483248(+) A-I      intronic chr1:231482609(+) A-I      intronic chr1:231482535(+) A-I      intronic chr1:231482464(+) A-I      intronic chr1:231482456(+) A-I      intronic chr1:231478318(+) A-I      intronic chr1:231478316(+) A-I      intronic chr1:231478277(+) A-I      intronic chr1:231477752(+) A-I      intronic chr1:231485658(+) A-I      intronic chr1:231477504(+) A-I      intronic chr1:231478626(+) A-I      intronic chr1:231481591(+) A-I      intronic chr1:231480133(+) A-I      intronic chr1:231482431(+) A-I      intronic chr1:231483175(+) A-I      intronic chr1:231481744(+) A-I      intronic chr1:231484724(+) A-I      intronic chr1:231484933(+) A-I      intronic chr1:231480159(+) A-I      intronic chr1:231476465(+) A-I      intronic chr1:231478233(+) A-I      intronic chr1:231481837(+) A-I      intronic chr1:231485574(+) A-I      intronic chr1:231485624(+) A-I      intronic chr1:231480064(+) A-I      intronic chr1:231485501(+) A-I      intronic chr1:231484846(+) A-I      intronic chr1:231481587(+) A-I      intronic chr1:231484856(+) A-I      intronic chr1:231477652(+) A-I      intronic chr1:231477721(+) A-I      intronic chr1:231482035(+) A-I      intronic chr1:231478289(+) A-I      intronic chr1:231481692(+) A-I      intronic chr1:231482567(+) A-I      intronic chr1:231482511(+) A-I      intronic chr1:231482581(+) A-I      intronic chr1:231483192(+) A-I      intronic chr1:231484907(+) A-I      intronic chr1:231485647(+) A-I      intronic chr1:231483254(+) A-I      intronic chr1:231485611(+) A-I      intronic chr1:231482487(+) A-I      intronic chr1:231481659(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SPRTN	chr1:231473035-231473036(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:231473283-231473284(+) m6A 5'UTR       24284625//24981863//27371828//27773536//22608085 chr1:231473428-231473429(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:231473553-231473554(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:231473639-231473640(+) m6A 5'UTR       24981863//22608085 chr1:231473779-231473780(+) m6A 5'UTR       24981863//22608085 chr1:231473830-231473831(+) m6A 5'UTR       24981863 chr1:231474175-231474176(+) m6A CDS//exon       22575960 chr1:231474247-231474248(+) m6A CDS//exon       24284625 chr1:231474259-231474260(+) m6A CDS//exon       24284625 chr1:231487168-231487169(+) m6A CDS//exon       27773535//22608085 chr1:231487208-231487209(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:231487240-231487241(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:231487279-231487280(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:231487291-231487292(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:231487371-231487372(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr1:231487391-231487392(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr1:231487407-231487408(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr1:231487447-231487448(+) m6A 3'UTR//intron       24981863 chr1:231487986-231487987(+) m6A 3'UTR//intron       24981863 chr1:231488066-231488067(+) m6A 3'UTR//intron       24981863 chr1:231488359-231488360(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr1:231488423-231488424(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr1:231488449-231488450(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr1:231488477-231488478(+) m6A 3'UTR//CDS//exon       24284625//24981863//22575960//22608085 chr1:231488499-231488500(+) m6A 3'UTR//CDS//exon       24284625//24981863//22575960//22608085 chr1:231488521-231488522(+) m6A 3'UTR//CDS       24284625//24981863//22575960//22608085 chr1:231488551-231488552(+) m6A 3'UTR//CDS       24284625//24981863//22575960//22608085 chr1:231488721-231488722(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085 chr1:231488879-231488880(+) m6A CDS       24284625//24981863//22608085 chr1:231489054-231489055(+) m6A CDS       24284625//24209618//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SPRTN	Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: SPRTN

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg