Detail Information

Basic Information:


  VIRBase ID:  

VHID00220132

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:           NAA50:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL22A-3p NAA50
miRBase
Accession/Entrez ID		 MIMAT0001575 80218
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - hNaa50p//MAK3//NAT13//NAT13P//NAT5//NAT5P//SAN

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NAA50
chr3:113452464(-) A-I      intronic
chr3:113459352(-) A-I      intronic
chr3:113459334(-) A-I      intronic
chr3:113459321(-) A-I      intronic
chr3:113459316(-) A-I      intronic
chr3:113459306(-) A-I      intronic
chr3:113459296(-) A-I      intronic
chr3:113448501(-) A-I      intronic
chr3:113448459(-) A-I      intronic
chr3:113447970(-) A-I      intronic
chr3:113447948(-) A-I      intronic
chr3:113447930(-) A-I      intronic
chr3:113445589(-) A-I      intronic
chr3:113448538(-) A-I      intronic
chr3:113445808(-) A-I      intronic
chr3:113448021(-) A-I      intronic
chr3:113448464(-) A-I      intronic
chr3:113448522(-) A-I      intronic
chr3:113448975(-) A-I      intronic
chr3:113448981(-) A-I      intronic
chr3:113449039(-) A-I      intronic
chr3:113449110(-) A-I      intronic
chr3:113454705(-) A-I      intronic
chr3:113445411(-) A-I      intronic
chr3:113444537(-) A-I      intronic
chr3:113444551(-) A-I      intronic
chr3:113445434(-) A-I      intronic
chr3:113445442(-) A-I      intronic
chr3:113445451(-) A-I      intronic
chr3:113445491(-) A-I      intronic
chr3:113436045(-) A-I      3'UTR
chr3:113435979(-) A-I      3'UTR
chr3:113435961(-) A-I      3'UTR
chr3:113436098(-) A-I      3'UTR
chr3:113436173(-) A-I      3'UTR
chr3:113436017(-) A-I      3'UTR
chr3:113436177(-) A-I      3'UTR
chr3:113447925(-) A-I      intronic
chr3:113449036(-) A-I      intronic
chr3:113445419(-) A-I      intronic
chr3:113448518(-) A-I      intronic
chr3:113459413(-) A-I      intronic
chr3:113445770(-) A-I      intronic
chr3:113448677(-) A-I      intronic
chr3:113448902(-) A-I      intronic
chr3:113445528(-) A-I      intronic
chr3:113448000(-) A-I      intronic
chr3:113445840(-) A-I      intronic
chr3:113448088(-) A-I      intronic
chr3:113461166(-) A-I      intronic
chr3:113444530(-) A-I      intronic
chr3:113445733(-) A-I      intronic
chr3:113445479(-) A-I      intronic
chr3:113435931(-) A-I      3'UTR
chr3:113436105(-) A-I      3'UTR
chr3:113436175(-) A-I      3'UTR
chr3:113436020(-) A-I      3'UTR
chr3:113436084(-) A-I      3'UTR
chr3:113436002(-) A-I      3'UTR
chr3:113436095(-) A-I      3'UTR
chr3:113436062(-) A-I      3'UTR
chr3:113449061(-) A-I      intronic
chr3:113448942(-) A-I      intronic
chr3:113447906(-) A-I      intronic
chr3:113445443(-) A-I      intronic
chr3:113449065(-) A-I      intronic
chr3:113447957(-) A-I      intronic
chr3:113448612(-) A-I      intronic
chr3:113445807(-) A-I      intronic
chr3:113448929(-) A-I      intronic
chr3:113445749(-) A-I      intronic
chr3:113445814(-) A-I      intronic
chr3:113445428(-) A-I      intronic
chr3:113447908(-) A-I      intronic
chr3:113448480(-) A-I      intronic
chr3:113444556(-) A-I      intronic
chr3:113448463(-) A-I      intronic
chr3:113445763(-) A-I      intronic
chr3:113448984(-) A-I      intronic
chr3:113445852(-) A-I      intronic
chr3:113445832(-) A-I      intronic
chr3:113445744(-) A-I      intronic
chr3:113445855(-) A-I      intronic
chr3:113448651(-) A-I      intronic
chr3:113449066(-) A-I      intronic
chr3:113448003(-) A-I      intronic
chr3:113445730(-) A-I      intronic
chr3:113445815(-) A-I      intronic
chr3:113448006(-) A-I      intronic
chr3:113452433(-) A-I      intronic
chr3:113449062(-) A-I      intronic
chr3:113444527(-) A-I      intronic
chr3:113445508(-) A-I      intronic
chr3:113445406(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NAA50
chr3:113447957(-) A-I intron -    22327324
chr3:113448463(-) A-I intron -    21960545
chr3:113458274(-) A-G intron -    21725310
chr3:113445350(-) A-C intron -    22484847
chr3:113445406(-) A-G intron -    22484847
chr3:113445417(-) A-G intron -    22484847
chr3:113445419(-) A-G intron -    22484847
chr3:113445425(-) A-G intron -    22484847
chr3:113445428(-) A-G intron -    22484847
chr3:113445443(-) A-G intron -    22484847
chr3:113445463(-) A-G intron -    22484847
chr3:113445744(-) A-G intron -    22484847
chr3:113445749(-) A-G intron -    22484847
chr3:113445814(-) A-G intron -    22484847
chr3:113447887(-) A-G intron -    22484847
chr3:113447906(-) A-G intron -    22484847
chr3:113447957(-) A-G intron -    22484847
chr3:113447997(-) A-G intron -    22484847
chr3:113448000(-) A-G intron -    22484847
chr3:113448006(-) A-G intron -    22484847
chr3:113448518(-) A-G intron -    22484847
chr3:113448618(-) A-G intron -    22484847
chr3:113448669(-) A-G intron -    22484847
chr3:113448902(-) A-G intron -    22484847
chr3:113448903(-) A-G intron -    22484847
chr3:113448929(-) A-G intron -    22484847
chr3:113448950(-) A-G intron -    22484847
chr3:113449036(-) A-G intron -    22484847
chr3:113449065(-) A-G intron -    22484847
chr3:113449066(-) A-G intron -    22484847
chr3:113454653(-) T-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NAA50
chr3:113439283-113439284(-) Am 3'UTR       -
chr3:113439429-113439430(-) m6A 3'UTR       -
chr3:113439501-113439502(-) m6A 3'UTR       -
chr3:113439961-113439962(-) m6A 3'UTR       27773535
chr3:113440440-113440441(-) m6A 3'UTR       24981863//27773535
chr3:113440590-113440591(-) m6A 3'UTR       24284625//24981863//28052920//27773535//27371828//22608085
chr3:113440605-113440606(-) m6A 3'UTR       24284625//24981863//28052920//27773535//27371828//22608085
chr3:113440617-113440618(-) m6A 3'UTR//CDS       24284625//24981863//28052920//27773535//27371828//22608085
chr3:113440658-113440659(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//22608085
chr3:113440698-113440699(-) Am 3'UTR//CDS//intron       -
chr3:113440706-113440707(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr3:113440716-113440717(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr3:113442334-113442335(-) Cm 3'UTR//5'UTR//CDS//intron       -
chr3:113442899-113442900(-) m6A 5'UTR//CDS//exon       -
chr3:113458341-113458342(-) m6A 5'UTR//intron       27371828
chr3:113464861-113464862(-) m6A 5'UTR//exon       24284625//27371828//27773536//22575960
chr3:113464968-113464969(-) m6A 5'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr3:113464987-113464988(-) m6A 5'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr3:113465036-113465037(-) m6A 5'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NAA50
Chromatin HCC cell line (HepG2)     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL22A-3p
Interactor2: NAA50

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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