Detail Information

Basic Information:


  VIRBase ID:  

VHID00220062

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:           ZXDC:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL22A-3p ZXDC
miRBase
Accession/Entrez ID		 MIMAT0001575 79364
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - ZXDL

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZXDC
chr3:126184672(-) A-I      intronic
chr3:126177249(-) A-I      3'UTR
chr3:126177294(-) A-I      3'UTR
chr3:126184670(-) A-I      intronic
chr3:126184677(-) A-I      intronic
chr3:126182076(-) A-I      intronic
chr3:126182087(-) A-I      intronic
chr3:126182079(-) A-I      intronic
chr3:126163312(-) A-I      intronic
chr3:126163263(-) A-I      intronic
chr3:126163170(-) A-I      intronic
chr3:126163155(-) A-I      intronic
chr3:126163154(-) A-I      intronic
chr3:126174786(-) A-I      3'UTR
chr3:126177152(-) A-I      3'UTR
chr3:126177191(-) A-I      3'UTR
chr3:126177248(-) A-I      3'UTR
chr3:126177274(-) A-I      3'UTR
chr3:126177208(-) A-I      3'UTR
chr3:126177308(-) A-I      3'UTR
chr3:126177348(-) A-I      3'UTR
chr3:126177185(-) A-I      3'UTR
chr3:126174767(-) A-I      3'UTR
chr3:126174598(-) A-I      3'UTR
chr3:126174654(-) A-I      3'UTR
chr3:126174683(-) A-I      3'UTR
chr3:126174703(-) A-I      3'UTR
chr3:126174731(-) A-I      3'UTR
chr3:126174780(-) A-I      3'UTR
chr3:126182050(-) A-I      intronic
chr3:126182184(-) A-I      intronic
chr3:126177263(-) A-I      3'UTR
chr3:126172634(-) A-I      3'UTR
chr3:126174597(-) A-I      3'UTR
chr3:126174575(-) A-I      3'UTR
chr3:126177285(-) A-I      3'UTR
chr3:126177284(-) A-I      3'UTR
chr3:126174584(-) A-I      3'UTR
chr3:126174677(-) A-I      3'UTR
chr3:126172546(-) A-I      3'UTR
chr3:126177165(-) A-I      3'UTR
chr3:126177217(-) A-I      3'UTR
chr3:126177244(-) A-I      3'UTR
chr3:126174743(-) A-I      3'UTR
chr3:126177282(-) A-I      3'UTR
chr3:126177240(-) A-I      3'UTR
chr3:126174674(-) A-I      3'UTR
chr3:126177354(-) A-I      3'UTR
chr3:126177259(-) A-I      3'UTR
chr3:126174596(-) A-I      3'UTR
chr3:126174721(-) A-I      3'UTR
chr3:126172662(-) A-I      3'UTR
chr3:126172543(-) A-I      3'UTR
chr3:126171853(-) A-I      3'UTR
chr3:126184611(-) A-I      intronic
chr3:126184646(-) A-I      intronic
chr3:126163373(-) A-I      intronic
chr3:126184549(-) A-I      intronic
chr3:126184537(-) A-I      intronic
chr3:126182066(-) A-I      intronic
chr3:126184682(-) A-I      intronic
chr3:126184770(-) A-I      intronic
chr3:126184622(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZXDC
chr3:126184682(-) A-I intron -    22327324
chr3:126171587(-) G-A exon 3'UTR    22484847
chr3:126174584(-) A-G exon 3'UTR    22484847
chr3:126174841(-) A-G exon 3'UTR    22484847
chr3:126174852(-) G-T exon 3'UTR    22484847
chr3:126177165(-) A-G exon 3'UTR    22484847
chr3:126177217(-) A-G exon 3'UTR    22484847
chr3:126177218(-) A-G exon 3'UTR    22484847
chr3:126177237(-) C-T exon 3'UTR    22484847
chr3:126182050(-) A-G intron -    22484847
chr3:126182066(-) A-G intron -    22484847
chr3:126182184(-) A-G intron -    22484847
chr3:126182191(-) A-G intron -    22484847
chr3:126184622(-) A-G intron -    22484847
chr3:126184637(-) A-G intron -    22484847
chr3:126184682(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZXDC
chr3:126156449-126156450(-) m6A 3'UTR//exon       27773535
chr3:126156597-126156598(-) m6A 3'UTR//exon       27773535
chr3:126156631-126156632(-) m6A 3'UTR//exon       27773535
chr3:126156638-126156639(-) m6A 3'UTR//exon       27773535
chr3:126157091-126157092(-) m6A 3'UTR//exon       24981863
chr3:126157111-126157112(-) m6A 3'UTR//exon       24981863
chr3:126157136-126157137(-) m6A 3'UTR//exon       24981863//22608085
chr3:126157159-126157160(-) m6A 3'UTR//exon       24981863//22608085
chr3:126157175-126157176(-) m6A 3'UTR//exon       24981863//22608085
chr3:126159414-126159415(-) m6A exon//intron       24284625
chr3:126159453-126159454(-) m6A exon//intron       24284625
chr3:126159466-126159467(-) m6A exon//intron       24284625
chr3:126159500-126159501(-) m6A exon//intron       24284625
chr3:126159705-126159706(-) m6A exon//intron       -
chr3:126159710-126159711(-) m6A exon//intron       -
chr3:126159758-126159759(-) m6A exon//intron       -
chr3:126160716-126160717(-) m6A 3'UTR//CDS//exon       24981863
chr3:126178295-126178296(-) Y intron       26075521
chr3:126178558-126178559(-) m6A CDS//intron       24284625//25456834//24981863//27773535//22608085
chr3:126179963-126179964(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr3:126179973-126179974(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr3:126179981-126179982(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr3:126180011-126180012(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr3:126180239-126180240(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr3:126180253-126180254(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr3:126180414-126180415(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:126180513-126180514(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:126180542-126180543(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:126180648-126180649(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:126180697-126180698(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:126180748-126180749(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:126180768-126180769(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:126180812-126180813(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:126180849-126180850(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:126180903-126180904(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:126181013-126181014(-) m6A CDS       24284625//24981863//22575960//22608085
chr3:126185016-126185017(-) m6A CDS       24284625//27773535
chr3:126185058-126185059(-) m6A CDS       24284625//27773535
chr3:126185115-126185116(-) m6A CDS       24284625//27773535
chr3:126191136-126191137(-) m6A CDS       24284625//24981863
chr3:126194304-126194305(-) m6A CDS       24209618//27773536
chr3:126194703-126194704(-) m6A CDS       24981863//27371828//27773536
chr3:126194713-126194714(-) m6A 5'UTR       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZXDC
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL22A-3p
Interactor2: ZXDC

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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