Basic Information:

  VIRBase ID:  

VHID00219892

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          ARFGEF3:  NM_020340     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	ARFGEF3
miRBase Accession/Entrez ID	MIMAT0001575	57221
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	A7322//BIG3//C6orf92//dJ171N11.1//KIAA1244//PPP1R33

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARFGEF3	chr6:138587638(+) A-I      intronic chr6:138524965(+) A-I      intronic chr6:138533436(+) A-I      intronic chr6:138570624(+) A-I      intronic chr6:138570640(+) A-I      intronic chr6:138575292(+) A-I      intronic chr6:138633083(+) A-I      intronic chr6:138609319(+) A-I      intronic chr6:138596787(+) A-I      intronic chr6:138586952(+) A-I      intronic chr6:138575298(+) A-I      intronic chr6:138524963(+) A-I      intronic chr6:138578034(+) A-I      intronic chr6:138648488(+) A-I      intronic chr6:138533410(+) A-I      intronic chr6:138554653(+) A-I      intronic chr6:138633092(+) A-I      intronic chr6:138587219(+) A-I      intronic chr6:138592371(+) A-I      intronic chr6:138616678(+) A-I      intronic chr6:138654719(+) A-I      intronic chr6:138575636(+) A-I      intronic chr6:138586954(+) A-I      intronic chr6:138553550(+) A-I      intronic chr6:138580940(+) A-I      intronic chr6:138659781(+) A-I      3'UTR chr6:138553531(+) A-I      intronic chr6:138554788(+) A-I      intronic chr6:138648487(+) A-I      intronic chr6:138610318(+) A-I      intronic chr6:138587650(+) A-I      intronic chr6:138553495(+) A-I      intronic chr6:138609280(+) A-I      intronic chr6:138554806(+) A-I      intronic chr6:138553521(+) A-I      intronic chr6:138610147(+) A-I      intronic chr6:138633078(+) A-I      intronic chr6:138587610(+) A-I      intronic chr6:138634027(+) A-I      intronic chr6:138578015(+) A-I      intronic chr6:138597930(+) A-I      intronic chr6:138633128(+) A-I      intronic chr6:138501080(+) A-I      intronic chr6:138609660(+) A-I      intronic chr6:138609675(+) A-I      intronic chr6:138553522(+) A-I      intronic chr6:138587644(+) A-I      intronic chr6:138554679(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARFGEF3	chr6:138576577-138576578(+) m6A CDS       24981863 chr6:138576627-138576628(+) m6A CDS       24284625//24981863 chr6:138576676-138576677(+) m6A CDS       24284625//25456834//24981863 chr6:138576749-138576750(+) m6A CDS       24284625//24209618//25456834 chr6:138576762-138576763(+) m6A CDS       24284625//24209618//25456834 chr6:138576811-138576812(+) m6A CDS       24284625//25456834 chr6:138584086-138584087(+) m6A CDS       24284625//24981863 chr6:138584148-138584149(+) m6A CDS       24284625//24209618//24981863//22608085 chr6:138584159-138584160(+) m6A CDS       24284625//24209618//24981863//22608085 chr6:138584186-138584187(+) m6A CDS       24284625//24209618//24981863//22608085 chr6:138584199-138584200(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr6:138584211-138584212(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr6:138584220-138584221(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr6:138584279-138584280(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr6:138584292-138584293(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr6:138584361-138584362(+) m6A CDS       24284625//24209618//24981863//22608085 chr6:138584369-138584370(+) m6A CDS       24284625//24209618//24981863//22608085 chr6:138584424-138584425(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138584435-138584436(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138584481-138584482(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:138584505-138584506(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:138584517-138584518(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:138584529-138584530(+) Tm CDS       - chr6:138584546-138584547(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138584556-138584557(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138584582-138584583(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138584602-138584603(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138584613-138584614(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138584709-138584710(+) m6A CDS       25456834 chr6:138584724-138584725(+) m6A CDS       25456834 chr6:138655279-138655280(+) m6A CDS       24284625//24981863//22608085 chr6:138655309-138655310(+) m6A CDS       24284625//24981863//22608085 chr6:138655320-138655321(+) m6A CDS       24284625//24981863//22608085 chr6:138655564-138655565(+) m6A CDS       25456834//24981863//22608085 chr6:138655578-138655579(+) m6A CDS       24209618//25456834//24981863//22608085 chr6:138655616-138655617(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138655712-138655713(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr6:138655744-138655745(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:138655753-138655754(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:138655860-138655861(+) m6A CDS       25456834 chr6:138655936-138655937(+) m6A CDS       24284625//24981863 chr6:138656014-138656015(+) m6A CDS       24284625//24981863 chr6:138656043-138656044(+) m6A CDS       24284625//24981863 chr6:138656081-138656082(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138656161-138656162(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:138656197-138656198(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:138656251-138656252(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:138657437-138657438(+) m6A CDS       24284625//25456834 chr6:138657483-138657484(+) m6A CDS       24284625//25456834 chr6:138657488-138657489(+) m6A CDS       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARFGEF3	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: ARFGEF3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg