Detail Information

Basic Information:


  VIRBase ID:  

VHID00219692

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:           CCDC93:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL22A-3p CCDC93
miRBase
Accession/Entrez ID		 MIMAT0001575 54520
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCDC93
chr2:118767064(-) A-I      intronic
chr2:118691798(-) A-I      intronic
chr2:118691796(-) A-I      intronic
chr2:118691738(-) A-I      intronic
chr2:118691735(-) A-I      intronic
chr2:118675848(-) A-I      3'UTR
chr2:118736360(-) A-I      intronic
chr2:118767638(-) A-I      intronic
chr2:118750062(-) A-I      intronic
chr2:118724718(-) A-I      intronic
chr2:118714578(-) A-I      intronic
chr2:118724707(-) A-I      intronic
chr2:118750052(-) A-I      intronic
chr2:118750047(-) A-I      intronic
chr2:118750872(-) A-I      intronic
chr2:118750779(-) A-I      intronic
chr2:118750759(-) A-I      intronic
chr2:118678747(-) A-I      intronic
chr2:118751599(-) A-I      intronic
chr2:118750934(-) A-I      intronic
chr2:118751378(-) A-I      intronic
chr2:118751456(-) A-I      intronic
chr2:118751480(-) A-I      intronic
chr2:118751498(-) A-I      intronic
chr2:118751514(-) A-I      intronic
chr2:118767623(-) A-I      intronic
chr2:118751448(-) A-I      intronic
chr2:118751447(-) A-I      intronic
chr2:118751597(-) A-I      intronic
chr2:118751485(-) A-I      intronic
chr2:118751513(-) A-I      intronic
chr2:118722470(-) A-I      intronic
chr2:118714514(-) A-I      intronic
chr2:118751564(-) A-I      intronic
chr2:118736440(-) A-I      intronic
chr2:118749936(-) A-I      intronic
chr2:118749958(-) A-I      intronic
chr2:118750805(-) A-I      intronic
chr2:118750808(-) A-I      intronic
chr2:118736462(-) A-I      intronic
chr2:118750092(-) A-I      intronic
chr2:118750909(-) A-I      intronic
chr2:118766822(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CCDC93
chr2:118749945(-) C-G intron -    22484847
chr2:118750093(-) A-G intron -    22484847
chr2:118750783(-) A-G intron -    22484847
chr2:118751447(-) A-G intron -    22484847
chr2:118751448(-) A-G intron -    22484847
chr2:118751485(-) A-G intron -    22484847
chr2:118751513(-) A-G intron -    22484847
chr2:118763327(-) A-T intron -    22484847
chr2:118763328(-) G-T intron -    22484847
chr2:118766719(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCDC93
chr2:118674542-118674543(-) m6A 3'UTR       -
chr2:118674557-118674558(-) m6A 3'UTR       -
chr2:118676804-118676805(-) m6A 3'UTR       27773535
chr2:118676885-118676886(-) m6A 3'UTR       24981863//27773535
chr2:118676918-118676919(-) m6A 3'UTR       24209618//24981863//27773535
chr2:118676980-118676981(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr2:118677053-118677054(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr2:118677199-118677200(-) m6A 3'UTR       24981863//27773535//22608085
chr2:118677217-118677218(-) m6A 3'UTR       24981863//27773535//22608085
chr2:118677412-118677413(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:118677441-118677442(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:118677511-118677512(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:118677603-118677604(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr2:118677724-118677725(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:118677731-118677732(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr2:118677917-118677918(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22608085
chr2:118688632-118688633(-) m6A 3'UTR//CDS//exon       24209618//24981863//27773535//27371828//22608085
chr2:118688688-118688689(-) m6A 3'UTR//CDS//exon       24209618//24981863//27773535//27371828//22608085
chr2:118688703-118688704(-) m6A 3'UTR//CDS//exon       24209618//24981863//27773535//27371828
chr2:118693106-118693107(-) m6A 3'UTR//CDS//exon       24209618//27773535
chr2:118693128-118693129(-) m6A 3'UTR//CDS//exon       24209618//27773535
chr2:118694286-118694287(-) m6A 3'UTR//CDS//exon       27773535
chr2:118694301-118694302(-) m6A 3'UTR//CDS//exon       27773535
chr2:118696666-118696667(-) m6A 3'UTR//CDS//exon       27773535
chr2:118698777-118698778(-) m6A 3'UTR//CDS//exon       27773535
chr2:118701623-118701624(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr2:118701651-118701652(-) m6A 3'UTR//CDS//exon       27773535
chr2:118701657-118701658(-) m6A CDS       27773535
chr2:118704423-118704424(-) m6A CDS       24981863//27773535//27371828
chr2:118705651-118705652(-) m6A exon//intron       24981863//27773535//27371828
chr2:118705704-118705705(-) m6A CDS//exon       24209618//24981863//27773535//27371828
chr2:118705750-118705751(-) m6A CDS//exon       24209618//24981863//27773535//27371828
chr2:118706945-118706946(-) m6A CDS//exon       24209618//24981863//27773535//27371828
chr2:118706950-118706951(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr2:118706964-118706965(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr2:118709125-118709126(-) m6A exon//intron       24981863//27773535//27371828
chr2:118709198-118709199(-) m6A exon//intron       24981863//27773535
chr2:118709220-118709221(-) m6A exon//intron       24981863//27773535
chr2:118709258-118709259(-) m6A exon//intron       24981863//27773535
chr2:118709273-118709274(-) m6A exon//intron       24981863//27773535
chr2:118715952-118715953(-) m6A CDS//exon       24284625//24981863//27773535
chr2:118715957-118715958(-) m6A CDS//exon       24284625//24981863//27773535
chr2:118715977-118715978(-) m6A CDS//exon       24284625//24981863//27773535
chr2:118716014-118716015(-) m6A CDS//exon       24981863//27773535
chr2:118731531-118731532(-) m6A CDS//exon       24981863//27773535
chr2:118732848-118732849(-) m6A CDS//exon       24981863//27773535
chr2:118753028-118753029(-) m6A CDS//exon       24981863//27773535
chr2:118753038-118753039(-) m6A CDS//exon       24981863//27773535
chr2:118753856-118753857(-) m6A CDS//exon       24981863//27773535
chr2:118766210-118766211(-) m6A CDS       27371828
chr2:118766227-118766228(-) m6A CDS       27371828
chr2:118771630-118771631(-) m6A 5'UTR       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CCDC93
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL22A-3p
Interactor2: CCDC93

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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