Detail Information

Basic Information:


  VIRBase ID:  

VHID00219313

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:           PRDM4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL22A-3p PRDM4
miRBase
Accession/Entrez ID		 MIMAT0001575 11108
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - PFM1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PRDM4
chr12:108148330(-) A-I      intronic
chr12:108148342(-) A-I      intronic
chr12:108148353(-) A-I      intronic
chr12:108148355(-) A-I      intronic
chr12:108148333(-) A-I      intronic
chr12:108148373(-) A-I      intronic
chr12:108141832(-) A-I      intronic
chr12:108143290(-) A-I      intronic
chr12:108144106(-) A-I      intronic
chr12:108141831(-) A-I      intronic
chr12:108144259(-) A-I      intronic
chr12:108152926(-) A-I      intronic
chr12:108141712(-) A-I      intronic
chr12:108150034(-) A-I      intronic
chr12:108144897(-) A-I      intronic
chr12:108141951(-) A-I      intronic
chr12:108144271(-) A-I      intronic
chr12:108143292(-) A-I      intronic
chr12:108143229(-) A-I      intronic
chr12:108143205(-) A-I      intronic
chr12:108141787(-) A-I      intronic
chr12:108152928(-) A-I      intronic
chr12:108140429(-) A-I      intronic
chr12:108141696(-) A-I      intronic
chr12:108144072(-) A-I      intronic
chr12:108140529(-) A-I      intronic
chr12:108134119(-) A-I      intronic
chr12:108141652(-) A-I      intronic
chr12:108152240(-) A-I      intronic
chr12:108152226(-) A-I      intronic
chr12:108152104(-) A-I      intronic
chr12:108149955(-) A-I      intronic
chr12:108141738(-) A-I      intronic
chr12:108149954(-) A-I      intronic
chr12:108149693(-) A-I      intronic
chr12:108149036(-) A-I      intronic
chr12:108148335(-) A-I      intronic
chr12:108144784(-) A-I      intronic
chr12:108148297(-) A-I      intronic
chr12:108148284(-) A-I      intronic
chr12:108144751(-) A-I      intronic
chr12:108141706(-) A-I      intronic
chr12:108152093(-) A-I      intronic
chr12:108144783(-) A-I      intronic
chr12:108148916(-) A-I      intronic
chr12:108140784(-) A-I      intronic
chr12:108152925(-) A-I      intronic
chr12:108140400(-) A-I      intronic
chr12:108152143(-) A-I      intronic
chr12:108149739(-) A-I      intronic
chr12:108144800(-) A-I      intronic
chr12:108149828(-) A-I      intronic
chr12:108140475(-) A-I      intronic
chr12:108136743(-) A-I      intronic
chr12:108144066(-) A-I      intronic
chr12:108141708(-) A-I      intronic
chr12:108144140(-) A-I      intronic
chr12:108144105(-) A-I      intronic
chr12:108144701(-) A-I      intronic
chr12:108150035(-) A-I      intronic
chr12:108141707(-) A-I      intronic
chr12:108140872(-) A-I      intronic
chr12:108140541(-) A-I      intronic
chr12:108148924(-) A-I      intronic
chr12:108140841(-) A-I      intronic
chr12:108143283(-) A-I      intronic
chr12:108144080(-) A-I      intronic
chr12:108140534(-) A-I      intronic
chr12:108141122(-) A-I      intronic
chr12:108153031(-) A-I      intronic
chr12:108140535(-) A-I      intronic
chr12:108141642(-) A-I      intronic
chr12:108143278(-) A-I      intronic
chr12:108144870(-) A-I      intronic
chr12:108140426(-) A-I      intronic
chr12:108141856(-) A-I      intronic
chr12:108135443(-) A-I      intronic
chr12:108141686(-) A-I      intronic
chr12:108144155(-) A-I      intronic
chr12:108139081(-) A-I      intronic
chr12:108144746(-) A-I      intronic
chr12:108141695(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PRDM4
chr12:108143283(-) A-I intron -    22327324
chr12:108144072(-) A-I intron -    22327324
chr12:108140426(-) A-G intron -    22484847
chr12:108143278(-) A-G intron -    22484847
chr12:108143283(-) A-G intron -    22484847
chr12:108144072(-) A-G intron -    22484847
chr12:108144105(-) A-G intron -    22484847
chr12:108140541(-) A-G intron -    22484847
chr12:108140872(-) A-G intron -    22484847
chr12:108149739(-) A-G intron -    22484847
chr12:108149828(-) A-G intron -    22484847
chr12:108152925(-) A-G intron -    22484847
chr12:108152926(-) A-G intron -    22484847
chr12:108152928(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PRDM4
chr12:108126660-108126661(-) m6A 3'UTR       24981863//27773535//22608085
chr12:108126750-108126751(-) m6A 3'UTR       24981863//27773535//22608085
chr12:108126795-108126796(-) m6A 3'UTR       24981863//27773535//22608085
chr12:108126825-108126826(-) m6A 3'UTR       24981863//27773535//22608085
chr12:108126986-108126987(-) m6A 3'UTR       22608085
chr12:108127061-108127062(-) m6A 3'UTR       22608085
chr12:108127129-108127130(-) m6A 3'UTR       27773535//22608085
chr12:108127200-108127201(-) m6A 3'UTR       24209618//24981863//27773535
chr12:108127216-108127217(-) m6A 3'UTR       24209618//27773535
chr12:108127239-108127240(-) m6A 3'UTR       24209618//27773535
chr12:108127340-108127341(-) m6A 3'UTR       24209618//27773535
chr12:108127463-108127464(-) m6A 3'UTR       24284625//27773535//22608085
chr12:108127512-108127513(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr12:108127549-108127550(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr12:108127671-108127672(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr12:108127763-108127764(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr12:108127793-108127794(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr12:108127806-108127807(-) m6A 3'UTR       24981863//27773535//22608085
chr12:108127816-108127817(-) m6A 3'UTR       24981863//27773535//22608085
chr12:108127864-108127865(-) m6A 3'UTR       24981863//27773535//22608085
chr12:108127974-108127975(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr12:108128044-108128045(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr12:108128051-108128052(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr12:108128062-108128063(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr12:108128095-108128096(-) m1A 3'UTR//CDS       26863410
chr12:108128141-108128142(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22608085
chr12:108128252-108128253(-) m6A 3'UTR//CDS       27773535//22608085
chr12:108134921-108134922(-) m6A 3'UTR//CDS//exon       27773535
chr12:108145214-108145215(-) m6A CDS//intron       24284625
chr12:108145223-108145224(-) m6A CDS//intron       24284625
chr12:108145235-108145236(-) m6A CDS//intron       24284625//24981863//22608085
chr12:108145274-108145275(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr12:108145299-108145300(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr12:108145342-108145343(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr12:108145509-108145510(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:108145567-108145568(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:108145618-108145619(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:108145751-108145752(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:108145805-108145806(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:108145820-108145821(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:108145840-108145841(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr12:108145960-108145961(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr12:108147712-108147713(-) m6A CDS       24284625//27773535
chr12:108147765-108147766(-) m6A CDS       27773535
chr12:108147864-108147865(-) m6A CDS//exon       24284625//27773535
chr12:108154352-108154353(-) m6A 5'UTR//exon       27773536
chr12:108154777-108154778(-) m6A 5'UTR//exon//intron       24981863
chr12:108154795-108154796(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PRDM4
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL22A-3p
Interactor2: PRDM4

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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