Basic Information:

  VIRBase ID:  

VHID00219272

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          CHL1:  NR_045572     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	CHL1
miRBase Accession/Entrez ID	MIMAT0001575	10752
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CALL//L1CAM2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CHL1	chr3:301826(+) A-I      intronic chr3:300867(+) A-I      intronic chr3:335839(+) A-I      intronic chr3:268319(+) A-I      intronic chr3:291751(+) A-I      intronic chr3:362276(+) A-I      intronic chr3:301693(+) A-I      intronic chr3:311289(+) A-I      intronic chr3:310231(+) A-I      intronic chr3:267791(+) A-I      intronic chr3:310150(+) A-I      intronic chr3:310103(+) A-I      intronic chr3:301872(+) A-I      intronic chr3:301868(+) A-I      intronic chr3:301764(+) A-I      intronic chr3:301752(+) A-I      intronic chr3:300864(+) A-I      intronic chr3:300716(+) A-I      intronic chr3:311308(+) A-I      intronic chr3:301772(+) A-I      intronic chr3:300756(+) A-I      intronic chr3:310071(+) A-I      intronic chr3:311326(+) A-I      intronic chr3:442774(+) A-I      intronic chr3:300866(+) A-I      intronic chr3:310055(+) A-I      intronic chr3:335065(+) A-I      intronic chr3:300691(+) A-I      intronic chr3:301827(+) A-I      intronic chr3:247062(+) A-I      intronic chr3:311391(+) A-I      intronic chr3:442493(+) A-I      intronic chr3:300734(+) A-I      intronic chr3:310057(+) A-I      intronic chr3:247071(+) A-I      intronic chr3:246933(+) A-I      intronic chr3:310133(+) A-I      intronic chr3:387247(+) A-I      intronic chr3:301733(+) A-I      intronic chr3:310068(+) A-I      intronic chr3:310097(+) A-I      intronic chr3:300729(+) A-I      intronic chr3:310031(+) A-I      intronic chr3:338788(+) A-I      intronic chr3:300856(+) A-I      intronic chr3:300865(+) A-I      intronic chr3:310052(+) A-I      intronic chr3:299309(+) A-I      intronic chr3:311430(+) A-I      intronic chr3:310098(+) A-I      intronic chr3:300789(+) A-I      intronic chr3:351293(+) A-I      intronic chr3:442365(+) A-I      intronic chr3:300878(+) A-I      intronic chr3:335837(+) A-I      intronic chr3:300746(+) A-I      intronic chr3:300696(+) A-I      intronic chr3:301719(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CHL1	chr3:437377(+) A-G intron -    22484847 chr3:267821(+) A-G intron -    22484847 chr3:300729(+) A-G intron -    22484847 chr3:300746(+) A-G intron -    22484847 chr3:300756(+) A-G intron -    22484847 chr3:300866(+) A-G intron -    22484847 chr3:300878(+) A-G intron -    22484847 chr3:310133(+) A-G intron -    22484847 chr3:311309(+) A-G intron -    22484847 chr3:311326(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CHL1	chr3:238500-238501(+) m6A 5'UTR//exon       - chr3:238572-238573(+) m6A 5'UTR//exon       - chr3:238582-238583(+) m6A 5'UTR//exon       - chr3:238598-238599(+) m6A 5'UTR//exon       - chr3:238621-238622(+) m6A 5'UTR//exon       - chr3:238652-238653(+) m6A 5'UTR//exon       - chr3:238719-238720(+) m6A 5'UTR//exon       - chr3:238976-238977(+) m6A 5'UTR//intron       - chr3:447394-447395(+) m6A 3'UTR       - chr3:447464-447465(+) m6A 3'UTR       - chr3:447484-447485(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CHL1	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: CHL1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg