Basic Information:

  VIRBase ID:  

VHID00219132

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-3p:  MIMAT0001575          SLK:  NM_014720     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL22A-3p	SLK
miRBase Accession/Entrez ID	MIMAT0001575	9748
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bA16H23.1//LOSK//se20-9//STK2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLK	chr10:105777324(+) A-I      intronic chr10:105731217(+) A-I      intronic chr10:105777342(+) A-I      intronic chr10:105777337(+) A-I      intronic chr10:105777364(+) A-I      intronic chr10:105777331(+) A-I      intronic chr10:105777435(+) A-I      intronic chr10:105735870(+) A-I      intronic chr10:105775966(+) A-I      intronic chr10:105777379(+) A-I      intronic chr10:105777269(+) A-I      intronic chr10:105767286(+) A-I      intronic chr10:105775970(+) A-I      intronic chr10:105777367(+) A-I      intronic chr10:105775822(+) A-I      intronic chr10:105776064(+) A-I      intronic chr10:105761657(+) A-I      intronic chr10:105777377(+) A-I      intronic chr10:105777421(+) A-I      intronic chr10:105777338(+) A-I      intronic chr10:105777307(+) A-I      intronic chr10:105777498(+) A-I      intronic chr10:105775930(+) A-I      intronic chr10:105777447(+) A-I      intronic chr10:105777438(+) A-I      intronic chr10:105779137(+) A-I      intronic chr10:105735701(+) A-I      intronic chr10:105777518(+) A-I      intronic chr10:105735929(+) A-I      intronic chr10:105779133(+) A-I      intronic chr10:105775926(+) A-I      intronic chr10:105777383(+) A-I      intronic chr10:105777512(+) A-I      intronic chr10:105734538(+) A-I      intronic chr10:105767589(+) A-I      intronic chr10:105779193(+) A-I      intronic chr10:105731126(+) A-I      intronic chr10:105777412(+) A-I      intronic chr10:105777289(+) A-I      intronic chr10:105735881(+) A-I      intronic chr10:105777302(+) A-I      intronic chr10:105736369(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLK	chr10:105726976-105726977(+) m6A 5'UTR       24981863 chr10:105727029-105727030(+) m6A 5'UTR       24209618//24981863 chr10:105727132-105727133(+) m6A 5'UTR       24209618 chr10:105727184-105727185(+) m6A 5'UTR       24209618 chr10:105727360-105727361(+) m6A 5'UTR       24209618 chr10:105727444-105727445(+) m6A 5'UTR       24209618//24981863//22608085 chr10:105727483-105727484(+) m6A 5'UTR       24209618//24981863//27773535//22608085 chr10:105727568-105727569(+) m6A CDS       24981863//26404942//27773535//22608085 chr10:105727582-105727583(+) m6A CDS       24981863//26404942//27773535//22608085 chr10:105727588-105727589(+) m6A CDS       24981863//27773535//22608085 chr10:105727597-105727598(+) m6A CDS       24981863//27773535//22608085 chr10:105727619-105727620(+) m6A CDS       24981863 chr10:105750497-105750498(+) m6A CDS       22575960 chr10:105759641-105759642(+) m6A CDS       26404942 chr10:105761991-105761992(+) m6A CDS       22608085 chr10:105762034-105762035(+) m6A CDS       24981863//27773535//22608085 chr10:105762060-105762061(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:105762087-105762088(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr10:105762102-105762103(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr10:105762132-105762133(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr10:105762168-105762169(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr10:105762181-105762182(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr10:105762248-105762249(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105762256-105762257(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105762263-105762264(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105762316-105762317(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105762327-105762328(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105762427-105762428(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105762451-105762452(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105762512-105762513(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:105762544-105762545(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:105762586-105762587(+) m6A CDS       24209618//24981863//27773535//22575960//22608085 chr10:105762626-105762627(+) m6A CDS       24209618//24981863//27773535//22575960//22608085 chr10:105762773-105762774(+) m1A CDS       26863196 chr10:105762789-105762790(+) m6A CDS       24209618//24981863//27773535//22575960//22608085 chr10:105762800-105762801(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:105762812-105762813(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:105762821-105762822(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:105762834-105762835(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:105762841-105762842(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:105763047-105763048(+) m6A CDS       24284625//24981863//22608085 chr10:105763129-105763130(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085 chr10:105763135-105763136(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085 chr10:105763255-105763256(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:105763262-105763263(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:105765321-105765322(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:105765329-105765330(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:105765339-105765340(+) m6A CDS       24981863//27773535//22608085 chr10:105765351-105765352(+) m6A CDS       24981863//27773535//22608085 chr10:105765426-105765427(+) m6A CDS       24981863 chr10:105765678-105765679(+) m6A CDS       24981863 chr10:105765741-105765742(+) m6A CDS       24981863//27773535 chr10:105765759-105765760(+) m6A CDS       24981863//27773535 chr10:105767978-105767979(+) m6A CDS//exon       24981863//27773535 chr10:105767987-105767988(+) m6A CDS//exon       24981863//27773535 chr10:105768008-105768009(+) m6A CDS//exon       24981863//27773535 chr10:105768059-105768060(+) m6A CDS//exon       24981863//27773535 chr10:105768100-105768101(+) m6A CDS//exon       24981863//27773535 chr10:105777919-105777920(+) m6A CDS//exon       24981863//27773535 chr10:105777937-105777938(+) m6A CDS//exon       24981863//27773535 chr10:105778590-105778591(+) m6A CDS//exon       24981863//27773535 chr10:105778605-105778606(+) m6A CDS//exon       24981863//27773535 chr10:105778638-105778639(+) m6A CDS//exon       24981863//27773535 chr10:105778734-105778735(+) m6A exon//intron       24981863 chr10:105778841-105778842(+) m6A exon//intron       24981863 chr10:105779494-105779495(+) m6A CDS       24981863 chr10:105779523-105779524(+) m6A CDS       24981863 chr10:105779543-105779544(+) m6A CDS       24981863 chr10:105779551-105779552(+) m6A CDS       24981863 chr10:105779568-105779569(+) m6A CDS       24981863 chr10:105779599-105779600(+) m6A CDS       24981863//26404942//27773535 chr10:105779660-105779661(+) m6A CDS       24981863//27773535 chr10:105779676-105779677(+) m6A CDS       24981863//27773535 chr10:105780301-105780302(+) m6A CDS       24981863//27773535 chr10:105780355-105780356(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr10:105781410-105781411(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105781418-105781419(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105781439-105781440(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105781478-105781479(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105785357-105785358(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105785366-105785367(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:105785569-105785570(+) m6A 3'UTR       24284625//24209618//22608085 chr10:105785656-105785657(+) m6A 3'UTR       22608085 chr10:105785662-105785663(+) m6A 3'UTR       22608085 chr10:105785746-105785747(+) m6A 3'UTR       22608085 chr10:105787998-105787999(+) m6A 3'UTR       24981863 chr10:105788008-105788009(+) m6A 3'UTR       24981863 chr10:105788068-105788069(+) m6A 3'UTR       24981863 chr10:105788077-105788078(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLK	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL22A-3p
Interactor2: SLK

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg