Detail Information

Basic Information:


  VIRBase ID:  

VHID00218009

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL22A-5p:           RFT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL22A-5p RFT1
miRBase
Accession/Entrez ID		 MIMAT0001574 91869
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CDG1N

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RFT1
chr3:53147298(-) A-I      intronic
chr3:53147214(-) A-I      intronic
chr3:53147211(-) A-I      intronic
chr3:53147209(-) A-I      intronic
chr3:53147203(-) A-I      intronic
chr3:53147196(-) A-I      intronic
chr3:53147170(-) A-I      intronic
chr3:53146565(-) A-I      intronic
chr3:53146553(-) A-I      intronic
chr3:53146532(-) A-I      intronic
chr3:53146523(-) A-I      intronic
chr3:53145386(-) A-I      intronic
chr3:53145346(-) A-I      intronic
chr3:53145340(-) A-I      intronic
chr3:53145336(-) A-I      intronic
chr3:53145303(-) A-I      intronic
chr3:53143737(-) A-I      intronic
chr3:53143654(-) A-I      intronic
chr3:53142889(-) A-I      intronic
chr3:53142856(-) A-I      intronic
chr3:53142613(-) A-I      intronic
chr3:53138496(-) A-I      intronic
chr3:53138412(-) A-I      intronic
chr3:53132742(-) A-I      intronic
chr3:53130964(-) A-I      intronic
chr3:53130962(-) A-I      intronic
chr3:53130642(-) A-I      intronic
chr3:53129243(-) A-I      intronic
chr3:53129232(-) A-I      intronic
chr3:53128234(-) A-I      intronic
chr3:53127852(-) A-I      intronic
chr3:53162651(-) A-I      intronic
chr3:53162288(-) A-I      intronic
chr3:53162232(-) A-I      intronic
chr3:53162221(-) A-I      intronic
chr3:53162214(-) A-I      intronic
chr3:53162206(-) A-I      intronic
chr3:53162192(-) A-I      intronic
chr3:53150694(-) A-I      intronic
chr3:53162134(-) A-I      intronic
chr3:53162079(-) A-I      intronic
chr3:53152034(-) A-I      intronic
chr3:53150837(-) A-I      intronic
chr3:53150707(-) A-I      intronic
chr3:53162142(-) A-I      intronic
chr3:53142849(-) A-I      intronic
chr3:53142922(-) A-I      intronic
chr3:53143678(-) A-I      intronic
chr3:53143724(-) A-I      intronic
chr3:53153108(-) A-I      intronic
chr3:53162773(-) A-I      intronic
chr3:53162694(-) A-I      intronic
chr3:53122728(-) A-I      3'UTR
chr3:53122726(-) A-I      3'UTR
chr3:53122625(-) A-I      3'UTR
chr3:53130869(-) A-I      intronic
chr3:53127753(-) A-I      intronic
chr3:53130652(-) A-I      intronic
chr3:53152030(-) A-I      intronic
chr3:53142516(-) A-I      intronic
chr3:53150755(-) A-I      intronic
chr3:53130803(-) A-I      intronic
chr3:53130663(-) A-I      intronic
chr3:53142873(-) A-I      intronic
chr3:53142861(-) A-I      intronic
chr3:53141425(-) A-I      intronic
chr3:53152050(-) A-I      intronic
chr3:53153170(-) A-I      intronic
chr3:53150756(-) A-I      intronic
chr3:53122741(-) A-I      3'UTR
chr3:53122848(-) A-I      3'UTR
chr3:53122682(-) A-I      3'UTR
chr3:53122694(-) A-I      3'UTR
chr3:53122695(-) A-I      3'UTR
chr3:53122701(-) A-I      3'UTR
chr3:53143660(-) A-I      intronic
chr3:53143798(-) A-I      intronic
chr3:53162205(-) A-I      intronic
chr3:53153178(-) A-I      intronic
chr3:53142949(-) A-I      intronic
chr3:53162777(-) A-I      intronic
chr3:53153030(-) A-I      intronic
chr3:53146696(-) A-I      intronic
chr3:53128182(-) A-I      intronic
chr3:53143679(-) A-I      intronic
chr3:53129672(-) A-I      intronic
chr3:53142642(-) A-I      intronic
chr3:53146683(-) A-I      intronic
chr3:53142095(-) A-I      intronic
chr3:53127819(-) A-I      intronic
chr3:53153122(-) A-I      intronic
chr3:53141426(-) A-I      intronic
chr3:53127826(-) A-I      intronic
chr3:53130436(-) A-I      intronic
chr3:53128196(-) A-I      intronic
chr3:53142501(-) A-I      intronic
chr3:53162704(-) A-I      intronic
chr3:53142561(-) A-I      intronic
chr3:53130849(-) A-I      intronic
chr3:53161473(-) A-I      intronic
chr3:53130637(-) A-I      intronic
chr3:53150506(-) A-I      intronic
chr3:53151947(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RFT1
chr3:53130803(-) A-I intron -    22327324
chr3:53122793(-) A-G exon 3'UTR    22484847
chr3:53129277(-) A-G intron -    22484847
chr3:53130577(-) A-G intron -    22484847
chr3:53130637(-) A-G intron -    22484847
chr3:53130652(-) A-G intron -    22484847
chr3:53130663(-) A-G intron -    22484847
chr3:53130849(-) A-G intron -    22484847
chr3:53143581(-) A-G intron -    22484847
chr3:53143660(-) A-G intron -    22484847
chr3:53143676(-) A-G intron -    22484847
chr3:53143679(-) A-G intron -    22484847
chr3:53143798(-) A-G intron -    22484847
chr3:53143818(-) A-G intron -    22484847
chr3:53150506(-) A-G intron -    22484847
chr3:53150755(-) A-G intron -    22484847
chr3:53150756(-) A-G intron -    22484847
chr3:53151947(-) A-G intron -    22484847
chr3:53152030(-) A-G intron -    22484847
chr3:53152050(-) A-G intron -    22484847
chr3:53153030(-) A-G intron -    22484847
chr3:53153061(-) A-G intron -    22484847
chr3:53153122(-) A-G intron -    22484847
chr3:53153178(-) A-G intron -    22484847
chr3:53162186(-) A-G intron -    22484847
chr3:53162205(-) A-G intron -    22484847
chr3:53162231(-) A-G intron -    22484847
chr3:53162777(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RFT1
chr3:53123906-53123907(-) m6A 3'UTR       24284625//25456834
chr3:53123960-53123961(-) m6A 3'UTR       24284625
chr3:53124003-53124004(-) m6A 3'UTR       24284625
chr3:53124241-53124242(-) m6A 3'UTR       24284625
chr3:53124293-53124294(-) m6A 3'UTR       24284625
chr3:53125190-53125191(-) m6A 3'UTR       24981863
chr3:53125348-53125349(-) m6A 3'UTR       27773535
chr3:53125409-53125410(-) m6A 3'UTR       27773535
chr3:53125450-53125451(-) m6A 3'UTR       27773535
chr3:53125478-53125479(-) m6A 3'UTR       27773535
chr3:53125504-53125505(-) m6A 3'UTR       27773535
chr3:53125708-53125709(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr3:53125766-53125767(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:53125856-53125857(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:53125884-53125885(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr3:53125901-53125902(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:53125959-53125960(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:53125983-53125984(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr3:53126001-53126002(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr3:53126050-53126051(-) m6A CDS       24284625//25456834//24981863//27773535//27773536//22608085
chr3:53126422-53126423(-) m6A CDS       24284625//25456834//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RFT1
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL22A-5p
Interactor2: RFT1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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