Detail Information

Basic Information:


  VIRBase ID:  

VHID00211040

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H6-5p:           LGR4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H6-5p LGR4
miRBase
Accession/Entrez ID		 MIMAT0015651 55366
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - BNMD17//GPR48

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LGR4
chr11:27481545(-) A-I      intronic
chr11:27481551(-) A-I      intronic
chr11:27482805(-) A-I      intronic
chr11:27459486(-) A-I      intronic
chr11:27482832(-) A-I      intronic
chr11:27482878(-) A-I      intronic
chr11:27482829(-) A-I      intronic
chr11:27482815(-) A-I      intronic
chr11:27456699(-) A-I      intronic
chr11:27481145(-) A-I      intronic
chr11:27449859(-) A-I      intronic
chr11:27481580(-) A-I      intronic
chr11:27450373(-) A-I      intronic
chr11:27469945(-) A-I      intronic
chr11:27449822(-) A-I      intronic
chr11:27450376(-) A-I      intronic
chr11:27445999(-) A-I      intronic
chr11:27457314(-) A-I      intronic
chr11:27480223(-) A-I      intronic
chr11:27488612(-) A-I      intronic
chr11:27481200(-) A-I      intronic
chr11:27445884(-) A-I      intronic
chr11:27481116(-) A-I      intronic
chr11:27449899(-) A-I      intronic
chr11:27476730(-) A-I      intronic
chr11:27476124(-) A-I      intronic
chr11:27476115(-) A-I      intronic
chr11:27474772(-) A-I      intronic
chr11:27469951(-) A-I      intronic
chr11:27456626(-) A-I      intronic
chr11:27450378(-) A-I      intronic
chr11:27445869(-) A-I      intronic
chr11:27446392(-) A-I      intronic
chr11:27476722(-) A-I      intronic
chr11:27449821(-) A-I      intronic
chr11:27456697(-) A-I      intronic
chr11:27483573(-) A-I      intronic
chr11:27483385(-) A-I      intronic
chr11:27483540(-) A-I      intronic
chr11:27476153(-) A-I      intronic
chr11:27483622(-) A-I      intronic
chr11:27476160(-) A-I      intronic
chr11:27479455(-) A-I      intronic
chr11:27488993(-) A-I      intronic
chr11:27469666(-) A-I      intronic
chr11:27481500(-) A-I      intronic
chr11:27420633(-) A-I      intronic
chr11:27456768(-) A-I      intronic
chr11:27450410(-) A-I      intronic
chr11:27469978(-) A-I      intronic
chr11:27446409(-) A-I      intronic
chr11:27476264(-) A-I      intronic
chr11:27480336(-) A-I      intronic
chr11:27483574(-) A-I      intronic
chr11:27456767(-) A-I      intronic
chr11:27449879(-) A-I      intronic
chr11:27456797(-) A-I      intronic
chr11:27476186(-) A-I      intronic
chr11:27488606(-) A-I      intronic
chr11:27456828(-) A-I      intronic
chr11:27396718(-) A-I      intronic
chr11:27479477(-) A-I      intronic
chr11:27456632(-) A-I      intronic
chr11:27474780(-) A-I      intronic
chr11:27461712(-) A-I      intronic
chr11:27481635(-) A-I      intronic
chr11:27461043(-) A-I      intronic
chr11:27445963(-) A-I      intronic
chr11:27481498(-) A-I      intronic
chr11:27483617(-) A-I      intronic
chr11:27474753(-) A-I      intronic
chr11:27459429(-) A-I      intronic
chr11:27447097(-) A-I      intronic
chr11:27472079(-) A-I      intronic
chr11:27481555(-) A-I      intronic
chr11:27446520(-) A-I      intronic
chr11:27449958(-) A-I      intronic
chr11:27481162(-) A-I      intronic
chr11:27476278(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LGR4
chr11:27387608-27387609(-) m6A 3'UTR       27773535
chr11:27387632-27387633(-) m6A 3'UTR       27773535
chr11:27387675-27387676(-) m6A 3'UTR       27773535
chr11:27387838-27387839(-) m6A 3'UTR       27773535
chr11:27388860-27388861(-) m6A 3'UTR       26404942
chr11:27388924-27388925(-) m6A 3'UTR       26404942
chr11:27388939-27388940(-) m6A 3'UTR       26404942
chr11:27389184-27389185(-) m6A 3'UTR       27773535
chr11:27389248-27389249(-) m6A 3'UTR       24284625//27773535//22575960//22608085
chr11:27389266-27389267(-) m6A 3'UTR       24284625//27773535//22575960//22608085
chr11:27389356-27389357(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr11:27389412-27389413(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr11:27389417-27389418(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr11:27389516-27389517(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr11:27389543-27389544(-) Cm CDS       -
chr11:27389596-27389597(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr11:27389650-27389651(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr11:27389755-27389756(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr11:27389837-27389838(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr11:27390050-27390051(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr11:27390062-27390063(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr11:27390088-27390089(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr11:27390128-27390129(-) m6A CDS       24284625//24981863//26404942//22608085
chr11:27390289-27390290(-) m6A CDS       24284625
chr11:27434392-27434393(-) m6A CDS//intron       27773535
chr11:27493912-27493913(-) m6A 5'UTR       27773536//22575960
chr11:27493957-27493958(-) m6A 5'UTR       27773536//22575960
chr11:27493972-27493973(-) m6A 5'UTR       24209618//27773536//22575960
chr11:27493999-27494000(-) m6A 5'UTR       24209618//27773536//22575960
chr11:27494035-27494036(-) m6A 5'UTR       24209618//27773536//22575960
chr11:27494151-27494152(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22575960//22608085
chr11:27494159-27494160(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22575960//22608085
chr11:27494279-27494280(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LGR4
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H6-5p
Interactor2: LGR4

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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