Detail Information

Basic Information:


  VIRBase ID:  

VHID00209734

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H6-5p:           VDAC1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H6-5p VDAC1
miRBase
Accession/Entrez ID		 MIMAT0015651 7416
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - PORIN//VDAC-1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR VDAC1
chr5:133322212(-) A-I      intronic
chr5:133322180(-) A-I      intronic
chr5:133322153(-) A-I      intronic
chr5:133322103(-) A-I      intronic
chr5:133325307(-) A-I      intronic
chr5:133321245(-) A-I      intronic
chr5:133321173(-) A-I      intronic
chr5:133320271(-) A-I      intronic
chr5:133315309(-) A-I      intronic
chr5:133315296(-) A-I      intronic
chr5:133315294(-) A-I      intronic
chr5:133315291(-) A-I      intronic
chr5:133315259(-) A-I      intronic
chr5:133314580(-) A-I      intronic
chr5:133312733(-) A-I      intronic
chr5:133324165(-) A-I      intronic
chr5:133312607(-) A-I      intronic
chr5:133312587(-) A-I      intronic
chr5:133312563(-) A-I      intronic
chr5:133312547(-) A-I      intronic
chr5:133312518(-) A-I      intronic
chr5:133312516(-) A-I      intronic
chr5:133312327(-) A-I      intronic
chr5:133312120(-) A-I      intronic
chr5:133312113(-) A-I      intronic
chr5:133312109(-) A-I      intronic
chr5:133312025(-) A-I      intronic
chr5:133311994(-) A-I      intronic
chr5:133311377(-) A-I      intronic
chr5:133311351(-) A-I      intronic
chr5:133311308(-) A-I      intronic
chr5:133311263(-) A-I      intronic
chr5:133311248(-) A-I      intronic
chr5:133311228(-) A-I      intronic
chr5:133311219(-) A-I      intronic
chr5:133311187(-) A-I      intronic
chr5:133310873(-) A-I      intronic
chr5:133310872(-) A-I      intronic
chr5:133310859(-) A-I      intronic
chr5:133310754(-) A-I      intronic
chr5:133310740(-) A-I      intronic
chr5:133310522(-) A-I      intronic
chr5:133324086(-) A-I      intronic
chr5:133324048(-) A-I      intronic
chr5:133324043(-) A-I      intronic
chr5:133324003(-) A-I      intronic
chr5:133323290(-) A-I      intronic
chr5:133323282(-) A-I      intronic
chr5:133323269(-) A-I      intronic
chr5:133323261(-) A-I      intronic
chr5:133323203(-) A-I      intronic
chr5:133323201(-) A-I      intronic
chr5:133310823(-) A-I      intronic
chr5:133312049(-) A-I      intronic
chr5:133312074(-) A-I      intronic
chr5:133314569(-) A-I      intronic
chr5:133314592(-) A-I      intronic
chr5:133315348(-) A-I      intronic
chr5:133322266(-) A-I      intronic
chr5:133325619(-) A-I      intronic
chr5:133325422(-) A-I      intronic
chr5:133322264(-) A-I      intronic
chr5:133322232(-) A-I      intronic
chr5:133323196(-) A-I      intronic
chr5:133324398(-) A-I      intronic
chr5:133310561(-) A-I      intronic
chr5:133323177(-) A-I      intronic
chr5:133323030(-) A-I      intronic
chr5:133322969(-) A-I      intronic
chr5:133322835(-) A-I      intronic
chr5:133322306(-) A-I      intronic
chr5:133321293(-) A-I      intronic
chr5:133322267(-) A-I      intronic
chr5:133312713(-) A-I      intronic
chr5:133311289(-) A-I      intronic
chr5:133311979(-) A-I      intronic
chr5:133324033(-) A-I      intronic
chr5:133311329(-) A-I      intronic
chr5:133314683(-) A-I      intronic
chr5:133312683(-) A-I      intronic
chr5:133310847(-) A-I      intronic
chr5:133321096(-) A-I      intronic
chr5:133314486(-) A-I      intronic
chr5:133310755(-) A-I      intronic
chr5:133325143(-) A-I      intronic
chr5:133321276(-) A-I      intronic
chr5:133314460(-) A-I      intronic
chr5:133321153(-) A-I      intronic
chr5:133320416(-) A-I      intronic
chr5:133310398(-) A-I      intronic
chr5:133312028(-) A-I      intronic
chr5:133324333(-) A-I      intronic
chr5:133314041(-) A-I      intronic
chr5:133314566(-) A-I      intronic
chr5:133319875(-) A-I      intronic
chr5:133325247(-) A-I      intronic
chr5:133314615(-) A-I      intronic
chr5:133319979(-) A-I      intronic
chr5:133310795(-) A-I      intronic
chr5:133319955(-) A-I      intronic
chr5:133312048(-) A-I      intronic
chr5:133324155(-) A-I      intronic
chr5:133315183(-) A-I      intronic
chr5:133315292(-) A-I      intronic
chr5:133310461(-) A-I      intronic
chr5:133322255(-) A-I      intronic
chr5:133320382(-) A-I      intronic
chr5:133314055(-) A-I      intronic
chr5:133322847(-) A-I      intronic
chr5:133311353(-) A-I      intronic
chr5:133314461(-) A-I      intronic
chr5:133313997(-) A-I      intronic
chr5:133320042(-) A-I      intronic
chr5:133314532(-) A-I      intronic
chr5:133320047(-) A-I      intronic
chr5:133320452(-) A-I      intronic
chr5:133323112(-) A-I      intronic
chr5:133310897(-) A-I      intronic
chr5:133315196(-) A-I      intronic
chr5:133314555(-) A-I      intronic
chr5:133313996(-) A-I      intronic
chr5:133322791(-) A-I      intronic
chr5:133314459(-) A-I      intronic
chr5:133311334(-) A-I      intronic
chr5:133314100(-) A-I      intronic
chr5:133320003(-) A-I      intronic
chr5:133311280(-) A-I      intronic
chr5:133310552(-) A-I      intronic
chr5:133312255(-) A-I      intronic
chr5:133325278(-) A-I      intronic
chr5:133310427(-) A-I      intronic
chr5:133322344(-) A-I      intronic
chr5:133325275(-) A-I      intronic
chr5:133322258(-) A-I      intronic
chr5:133310723(-) A-I      intronic
chr5:133320184(-) A-I      intronic
chr5:133314621(-) A-I      intronic
chr5:133322897(-) A-I      intronic
chr5:133322895(-) A-I      intronic
chr5:133315232(-) A-I      intronic
chr5:133325318(-) A-I      intronic
chr5:133321188(-) A-I      intronic
chr5:133311249(-) A-I      intronic
chr5:133323125(-) A-I      intronic
chr5:133310902(-) A-I      intronic
chr5:133310702(-) A-I      intronic
chr5:133312134(-) A-I      intronic
chr5:133311387(-) A-I      intronic
chr5:133325532(-) A-I      intronic
chr5:133323260(-) A-I      intronic
chr5:133315235(-) A-I      intronic
chr5:133324137(-) A-I      intronic
chr5:133314691(-) A-I      intronic
chr5:133325486(-) A-I      intronic
chr5:133322848(-) A-I      intronic
chr5:133320383(-) A-I      intronic
chr5:133310876(-) A-I      intronic
chr5:133315391(-) A-I      intronic
chr5:133310581(-) A-I      intronic
chr5:133312613(-) A-I      intronic
chr5:133323312(-) A-I      intronic
chr5:133314101(-) A-I      intronic
chr5:133325519(-) A-I      intronic
chr5:133313936(-) A-I      intronic
chr5:133314107(-) A-I      intronic
chr5:133314642(-) A-I      intronic
chr5:133323014(-) A-I      intronic
chr5:133319752(-) A-I      intronic
chr5:133325620(-) A-I      intronic
chr5:133321197(-) A-I      intronic
chr5:133319960(-) A-I      intronic
chr5:133314564(-) A-I      intronic
chr5:133311406(-) A-I      intronic
chr5:133325523(-) A-I      intronic
chr5:133312096(-) A-I      intronic
chr5:133320222(-) A-I      intronic
chr5:133310524(-) A-I      intronic
chr5:133312586(-) A-I      intronic
chr5:133324115(-) A-I      intronic
chr5:133311316(-) A-I      intronic
chr5:133310607(-) A-I      intronic
chr5:133311290(-) A-I      intronic
chr5:133333317(-) A-I      intronic
chr5:133310912(-) A-I      intronic
chr5:133324112(-) A-I      intronic
chr5:133322314(-) A-I      intronic
chr5:133312653(-) A-I      intronic
chr5:133310907(-) A-I      intronic
chr5:133322216(-) A-I      intronic
chr5:133320266(-) A-I      intronic
chr5:133311423(-) A-I      intronic
chr5:133315258(-) A-I      intronic
chr5:133325359(-) A-I      intronic
chr5:133310504(-) A-I      intronic
chr5:133322226(-) A-I      intronic
chr5:133322225(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED VDAC1
chr5:133313996(-) A-I intron -    15342557
chr5:133314642(-) A-I intron -    15342557   //22028664
chr5:133314683(-) A-I intron -    15342557
chr5:133315253(-) A-I intron -    15342557
chr5:133315258(-) A-I intron -    15342557
chr5:133315285(-) A-I intron -    15342557
chr5:133315292(-) A-I intron -    15342557
chr5:133315298(-) A-I intron -    15342557
chr5:133315300(-) A-I intron -    15342557
chr5:133311289(-) A-I intron -    22327324
chr5:133328900(-) A-I intron -    22327324
chr5:133314459(-) A-I intron -    22028664
chr5:133314460(-) A-I intron -    22028664
chr5:133314461(-) A-I intron -    22028664
chr5:133314486(-) A-I intron -    22028664
chr5:133314532(-) A-I intron -    22028664
chr5:133314555(-) A-I intron -    22028664
chr5:133314566(-) A-I intron -    22028664
chr5:133314604(-) A-I intron -    22028664
chr5:133314609(-) A-I intron -    22028664
chr5:133314615(-) A-I intron -    22028664
chr5:133310461(-) A-G intron -    22484847
chr5:133310552(-) A-G intron -    22484847
chr5:133310722(-) A-G intron -    22484847
chr5:133310755(-) A-G intron -    22484847
chr5:133310897(-) A-G intron -    22484847
chr5:133310902(-) A-G intron -    22484847
chr5:133310952(-) G-T intron -    22484847
chr5:133311170(-) C-A intron -    22484847
chr5:133311249(-) A-G intron -    22484847
chr5:133311289(-) A-G intron -    22484847
chr5:133311329(-) A-G intron -    22484847
chr5:133311401(-) A-G intron -    22484847
chr5:133312134(-) A-G intron -    22484847
chr5:133312255(-) A-G intron -    22484847
chr5:133312613(-) A-G intron -    22484847
chr5:133312653(-) A-G intron -    22484847
chr5:133312683(-) A-G intron -    22484847
chr5:133314060(-) A-G intron -    22484847
chr5:133314107(-) A-G intron -    22484847
chr5:133314642(-) A-G intron -    22484847
chr5:133314691(-) A-G intron -    22484847
chr5:133315196(-) A-G intron -    22484847
chr5:133315232(-) A-G intron -    22484847
chr5:133315356(-) A-G intron -    22484847
chr5:133319960(-) A-G intron -    22484847
chr5:133320003(-) A-G intron -    22484847
chr5:133320184(-) A-G intron -    22484847
chr5:133320203(-) A-G intron -    22484847
chr5:133320218(-) A-G intron -    22484847
chr5:133320266(-) A-G intron -    22484847
chr5:133320383(-) A-G intron -    22484847
chr5:133321258(-) A-G intron -    22484847
chr5:133321259(-) A-G intron -    22484847
chr5:133321262(-) A-G intron -    22484847
chr5:133322216(-) A-G intron -    22484847
chr5:133322225(-) A-G intron -    22484847
chr5:133322226(-) A-G intron -    22484847
chr5:133322252(-) A-G intron -    22484847
chr5:133322255(-) A-G intron -    22484847
chr5:133322256(-) A-G intron -    22484847
chr5:133322258(-) A-G intron -    22484847
chr5:133322259(-) A-G intron -    22484847
chr5:133322847(-) A-G intron -    22484847
chr5:133322848(-) A-G intron -    22484847
chr5:133322895(-) A-G intron -    22484847
chr5:133322897(-) A-G intron -    22484847
chr5:133324333(-) A-G intron -    22484847
chr5:133325318(-) A-G intron -    22484847
chr5:133325486(-) A-G intron -    22484847
chr5:133333778(-) C-T intron -    22484847
chr5:133338486(-) T-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase VDAC1
chr5:133311622-133311623(-) m6A CDS//exon       24981863
chr5:133311632-133311633(-) m6A CDS//exon       24981863
chr5:133311653-133311654(-) m6A CDS//exon       24981863
chr5:133311667-133311668(-) m6A CDS//exon       24981863
chr5:133311701-133311702(-) m6A CDS//exon       24981863
chr5:133311784-133311785(-) m6A exon//intron       27773535
chr5:133316447-133316448(-) m6A CDS//exon       27773535//22575960
chr5:133316495-133316496(-) m6A CDS//exon       27773535//22575960
chr5:133316624-133316625(-) m6A CDS//exon       27773535
chr5:133316705-133316706(-) m6A exon//intron       27773535
chr5:133324497-133324498(-) m6A exon//intron       27773535
chr5:133324900-133324901(-) m6A exon//intron       27773535
chr5:133326586-133326587(-) m6A CDS//exon       27773535
chr5:133326769-133326770(-) m6A CDS//exon       27773535
chr5:133326784-133326785(-) m6A CDS//exon       27773535
chr5:133326811-133326812(-) m6A CDS//exon       27773535
chr5:133328016-133328017(-) m6A CDS//exon       27773535
chr5:133340317-133340318(-) m6A 5'UTR//intron       24981863//27773536
chr5:133340728-133340729(-) m6A 5'UTR       25456834//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate VDAC1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome HeLa cells     24205503
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H6-5p
Interactor2: VDAC1

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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