Basic Information:

  VIRBase ID:  

VHID00208219

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          C19orf54:  NM_001353809     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	C19orf54
miRBase Accession/Entrez ID	MIMAT0015650	284325
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C19orf54	chr19:41253688(-) A-I      intronic chr19:41252826(-) A-I      intronic chr19:41252294(-) A-I      intronic chr19:41254134(-) A-I      intronic chr19:41252285(-) A-I      intronic chr19:41252217(-) A-I      intronic chr19:41254224(-) A-I      intronic chr19:41254205(-) A-I      intronic chr19:41254202(-) A-I      intronic chr19:41255056(-) A-I      intronic chr19:41254196(-) A-I      intronic chr19:41254158(-) A-I      intronic chr19:41254157(-) A-I      intronic chr19:41253765(-) A-I      intronic chr19:41253730(-) A-I      intronic chr19:41253647(-) A-I      intronic chr19:41254198(-) A-I      intronic chr19:41253295(-) A-I      intronic chr19:41252963(-) A-I      intronic chr19:41247272(-) A-I      3'UTR chr19:41247296(-) A-I      3'UTR chr19:41247265(-) A-I      3'UTR chr19:41247346(-) A-I      3'UTR chr19:41252642(-) A-I      intronic chr19:41252296(-) A-I      intronic chr19:41253595(-) A-I      intronic chr19:41253737(-) A-I      intronic chr19:41255069(-) A-I      intronic chr19:41253515(-) A-I      intronic chr19:41255072(-) A-I      intronic chr19:41247200(-) A-I      3'UTR chr19:41252850(-) A-I      intronic chr19:41247236(-) A-I      3'UTR chr19:41253542(-) A-I      intronic chr19:41255123(-) A-I      intronic chr19:41249305(-) A-I      intronic chr19:41253503(-) A-I      intronic chr19:41252779(-) A-I      intronic chr19:41247239(-) A-I      3'UTR chr19:41252221(-) A-I      intronic chr19:41253695(-) A-I      intronic chr19:41253649(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	C19orf54	chr19:41252221(-) A-G intron -    22484847 chr19:41255074(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C19orf54	chr19:41246842-41246843(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr19:41246874-41246875(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr19:41247798-41247799(-) m6A 3'UTR//intron       27773535 chr19:41248013-41248014(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535 chr19:41248020-41248021(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535 chr19:41248026-41248027(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535 chr19:41248058-41248059(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535 chr19:41248069-41248070(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535 chr19:41248146-41248147(-) m6A 3'UTR//intron       24284625//27773535 chr19:41248350-41248351(-) m6A 3'UTR//CDS//intron       24284625//25456834//24981863 chr19:41248452-41248453(-) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27371828 chr19:41248483-41248484(-) Cm 3'UTR//CDS//intron       - chr19:41248491-41248492(-) m6A 3'UTR//CDS//intron       24284625//24981863//27371828 chr19:41248605-41248606(-) Y 3'UTR//CDS//intron       26075521 chr19:41255560-41255561(-) m6A CDS//intron       24284625//24981863//27773535 chr19:41255598-41255599(-) m6A CDS//intron       24284625//24981863//27773535 chr19:41255656-41255657(-) m6A CDS//intron       24284625//24981863//27773535 chr19:41255678-41255679(-) m6A CDS//intron       24284625//24981863//27773535 chr19:41255715-41255716(-) m6A 5'UTR//intron       24284625//24981863//27773535 chr19:41255736-41255737(-) m6A 5'UTR//intron       24284625//24981863//27773535 chr19:41255777-41255778(-) m6A 5'UTR//intron       24284625//24981863//27773535 chr19:41255801-41255802(-) m6A 5'UTR//intron       24284625//24981863//27773535 chr19:41255814-41255815(-) m6A 5'UTR//intron       24284625//24981863//27773535 chr19:41256257-41256258(-) m6A 5'UTR//intron       24284625//24981863//27773535 chr19:41256444-41256445(-) m6A 5'UTR//intron       24981863 chr19:41257320-41257321(-) m6A 5'UTR       24981863 chr19:41257391-41257392(-) m6A 5'UTR       24981863 chr19:41257403-41257404(-) m6A 5'UTR       24981863 chr19:41257410-41257411(-) m6A 5'UTR       24981863 chr19:41257419-41257420(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C19orf54	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: C19orf54

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg