Basic Information:

  VIRBase ID:  

VHID00208171

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          CRACR2B:  NM_173584     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	CRACR2B
miRBase Accession/Entrez ID	MIMAT0015650	283229
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EFCAB4A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CRACR2B	chr11:827616-827617(+) m6A 5'UTR//intron       - chr11:828355-828356(+) m6A 5'UTR//exon//intron       - chr11:830621-830622(+) m6A CDS//exon       24284625//27773536 chr11:830681-830682(+) m6A CDS//exon       24284625//27773536 chr11:830920-830921(+) m6A CDS//exon//intron       - chr11:831024-831025(+) m6A CDS//exon//intron       27773536 chr11:831246-831247(+) m6A CDS//exon       - chr11:831730-831731(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr11:831834-831835(+) m6A 3'UTR//exon       24284625//25456834 chr11:831843-831844(+) m6A 3'UTR//exon       24284625//25456834 chr11:831954-831955(+) m6A 3'UTR//exon       24284625//25456834 chr11:831972-831973(+) m6A 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CRACR2B	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: CRACR2B

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg