Detail Information

Basic Information:


  VIRBase ID:  

VHID00207645

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:           IQGAP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H5 IQGAP3
miRBase
Accession/Entrez ID		 MIMAT0015650 128239
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IQGAP3
chr1:156519141(-) A-I      intronic
chr1:156519151(-) A-I      intronic
chr1:156519180(-) A-I      intronic
chr1:156519187(-) A-I      intronic
chr1:156524646(-) A-I      intronic
chr1:156523520(-) A-I      intronic
chr1:156523512(-) A-I      intronic
chr1:156525182(-) A-I      intronic
chr1:156523511(-) A-I      intronic
chr1:156522750(-) A-I      intronic
chr1:156519200(-) A-I      intronic
chr1:156522744(-) A-I      intronic
chr1:156522736(-) A-I      intronic
chr1:156522622(-) A-I      intronic
chr1:156519428(-) A-I      intronic
chr1:156519416(-) A-I      intronic
chr1:156519399(-) A-I      intronic
chr1:156524644(-) A-I      intronic
chr1:156525143(-) A-I      intronic
chr1:156525200(-) A-I      intronic
chr1:156525206(-) A-I      intronic
chr1:156523576(-) A-I      intronic
chr1:156497231(-) A-I      intronic
chr1:156525245(-) A-I      intronic
chr1:156523610(-) A-I      intronic
chr1:156512028(-) A-I      intronic
chr1:156496773(-) A-I      intronic
chr1:156502131(-) A-I      intronic
chr1:156524683(-) A-I      intronic
chr1:156502127(-) A-I      intronic
chr1:156501961(-) A-I      intronic
chr1:156540552(-) A-I      intronic
chr1:156497218(-) A-I      intronic
chr1:156524657(-) A-I      intronic
chr1:156497170(-) A-I      intronic
chr1:156497158(-) A-I      intronic
chr1:156512540(-) A-I      intronic
chr1:156502404(-) A-I      intronic
chr1:156523645(-) A-I      intronic
chr1:156524645(-) A-I      intronic
chr1:156522757(-) A-I      intronic
chr1:156496692(-) A-I      intronic
chr1:156522621(-) A-I      intronic
chr1:156523572(-) A-I      intronic
chr1:156522694(-) A-I      intronic
chr1:156540166(-) A-I      intronic
chr1:156524656(-) A-I      intronic
chr1:156522766(-) A-I      intronic
chr1:156523646(-) A-I      intronic
chr1:156523490(-) A-I      intronic
chr1:156522895(-) A-I      intronic
chr1:156512538(-) A-I      intronic
chr1:156525185(-) A-I      intronic
chr1:156502437(-) A-I      intronic
chr1:156524593(-) A-I      intronic
chr1:156525285(-) A-I      intronic
chr1:156525187(-) A-I      intronic
chr1:156540466(-) A-I      intronic
chr1:156523640(-) A-I      intronic
chr1:156525293(-) A-I      intronic
chr1:156523581(-) A-I      intronic
chr1:156540165(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED IQGAP3
chr1:156512540(-) A-G intron -    22484847
chr1:156523464(-) G-A intron -    22484847
chr1:156523490(-) A-G intron -    22484847
chr1:156523581(-) A-G intron -    22484847
chr1:156524645(-) A-G intron -    22484847
chr1:156524656(-) A-G intron -    22484847
chr1:156525285(-) A-G intron -    22484847
chr1:156525293(-) A-G intron -    22484847
chr1:156540165(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IQGAP3
chr1:156495758-156495759(-) m6A 3'UTR//intron       27773535
chr1:156496002-156496003(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:156496008-156496009(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:156496036-156496037(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:156496110-156496111(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr1:156496176-156496177(-) m6A 3'UTR       24284625//24981863//27773535//22575960
chr1:156496192-156496193(-) m6A 3'UTR       24284625//24981863//27773535//27371828
chr1:156496349-156496350(-) m6A CDS       27773535
chr1:156499972-156499973(-) m6A CDS       24284625//27773536
chr1:156500057-156500058(-) m6A CDS       24284625//27773536//22575960
chr1:156502818-156502819(-) m6A CDS       27773535//27773536
chr1:156502867-156502868(-) m6A CDS       27773535//27773536
chr1:156503623-156503624(-) m6A CDS       24284625//27371828//27773536
chr1:156503647-156503648(-) m6A CDS       24284625//27371828//27773536
chr1:156503845-156503846(-) m6A CDS       27371828//27773536
chr1:156503864-156503865(-) m6A CDS       27773536
chr1:156508831-156508832(-) m6A exon//intron       27773535
chr1:156508853-156508854(-) m6A exon//intron       27773535
chr1:156508926-156508927(-) m6A exon//intron       27773535
chr1:156508945-156508946(-) m6A exon//intron       27773535
chr1:156509005-156509006(-) m6A exon//intron       27773535
chr1:156509014-156509015(-) m6A exon//intron       27773535
chr1:156509022-156509023(-) m6A exon//intron       27773535
chr1:156509050-156509051(-) m6A exon//intron       27773535
chr1:156509151-156509152(-) m6A exon//intron       27773535
chr1:156509187-156509188(-) m6A CDS//exon       27773535
chr1:156509277-156509278(-) m6A CDS       27773535
chr1:156509282-156509283(-) m6A CDS       27773535
chr1:156509665-156509666(-) m6A CDS       27773535
chr1:156509711-156509712(-) m6A CDS       27773535
chr1:156509737-156509738(-) m6A CDS       24981863//27773535
chr1:156510515-156510516(-) m6A CDS       27773535
chr1:156521603-156521604(-) m6A CDS       27773536
chr1:156521623-156521624(-) m6A CDS       27773536
chr1:156521771-156521772(-) m6A CDS       27773536
chr1:156521783-156521784(-) m6A CDS       27773536
chr1:156530732-156530733(-) m6A CDS       27773535//27371828//27773536
chr1:156531645-156531646(-) Gm CDS       -
chr1:156531648-156531649(-) m6A CDS       27773535//27773536
chr1:156531654-156531655(-) m6A CDS       27773535//27773536
chr1:156531684-156531685(-) m6A CDS       27773535//27773536
chr1:156532149-156532150(-) Tm intron       -
chr1:156533450-156533451(-) m6A CDS       27773535
chr1:156534442-156534443(-) m6A CDS       27773535
chr1:156534460-156534461(-) m6A CDS       27773535
chr1:156534467-156534468(-) m6A CDS       27773535
chr1:156535867-156535868(-) m6A CDS       27773535
chr1:156536213-156536214(-) m1A CDS       26863196
chr1:156542317-156542318(-) Gm 5'UTR//CDS       -
chr1:156542322-156542323(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:156542330-156542331(-) m1A 5'UTR       26863196//26863410
chr1:156542339-156542340(-) m6A 5'UTR       24284625//25456834//24981863//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate IQGAP3
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H5
Interactor2: IQGAP3

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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