Basic Information:

  VIRBase ID:  

VHID00207573

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          CCDC78:  NR_165383     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	CCDC78
miRBase Accession/Entrez ID	MIMAT0015650	124093
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C16orf25//CNM4//hsCCDC78//JFP10

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC78	chr16:772585-772586(-) m6A 3'UTR//exon       24981863 chr16:772602-772603(-) m6A 3'UTR//exon       24981863 chr16:772627-772628(-) m6A 3'UTR//exon       24981863 chr16:772691-772692(-) m6A 3'UTR//CDS//exon       24981863 chr16:772741-772742(-) m6A 3'UTR//CDS//exon       24981863 chr16:772836-772837(-) m6A exon//intron       24284625 chr16:772936-772937(-) m6A CDS//exon       - chr16:773113-773114(-) m6A CDS//exon       - chr16:774435-774436(-) m6A CDS//exon       - chr16:774460-774461(-) m6A CDS//exon       - chr16:774528-774529(-) m6A exon//intron       - chr16:774605-774606(-) m6A exon//intron       - chr16:774731-774732(-) m6A CDS//exon       - chr16:774882-774883(-) m6A exon//intron       - chr16:775032-775033(-) m6A exon//intron       24284625 chr16:775190-775191(-) m6A exon//intron       - chr16:775270-775271(-) m6A CDS//exon       - chr16:775279-775280(-) m6A 5'UTR//CDS//exon       - chr16:775341-775342(-) m6A exon//intron       24284625 chr16:776065-776066(-) m6A 5'UTR//CDS//exon       - chr16:776119-776120(-) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC78	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: CCDC78

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg