Basic Information:

  VIRBase ID:  

VHID00207465

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          LENG8:  NM_001375639     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	LENG8
miRBase Accession/Entrez ID	MIMAT0015650	114823
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	pp13842

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LENG8	chr19:54960231-54960232(+) m6A 5'UTR       24284625//25456834//24981863 chr19:54960393-54960394(+) m6A 5'UTR       24284625//25456834//24981863 chr19:54963236-54963237(+) m6A exon//intron       24284625 chr19:54963337-54963338(+) m6A CDS//exon       24284625 chr19:54964823-54964824(+) m6A CDS//intron       24284625 chr19:54964830-54964831(+) m6A CDS//intron       24284625 chr19:54965720-54965721(+) m6A CDS       24284625//22575960 chr19:54965740-54965741(+) m6A CDS       24284625//22575960 chr19:54965814-54965815(+) m6A CDS       24284625//22575960 chr19:54965849-54965850(+) m6A CDS       24284625 chr19:54966140-54966141(+) m6A CDS       24284625 chr19:54966264-54966265(+) m6A CDS       24284625 chr19:54966562-54966563(+) m6A CDS       24284625 chr19:54966595-54966596(+) m6A CDS       24284625//22575960 chr19:54966646-54966647(+) m6A CDS       24284625//24209618//22575960 chr19:54966652-54966653(+) m6A CDS       24284625//24209618//22575960 chr19:54967182-54967183(+) m1A CDS       26863410 chr19:54967348-54967349(+) m6A CDS       24284625//24981863 chr19:54967372-54967373(+) m6A CDS       24284625//24981863 chr19:54967517-54967518(+) m6A CDS       24284625//24981863 chr19:54967568-54967569(+) m6A CDS       24284625//24981863//27371828 chr19:54967873-54967874(+) m6A CDS       24284625//24981863//27371828 chr19:54967893-54967894(+) m1A CDS       26863410 chr19:54967925-54967926(+) m6A CDS       24284625//24981863//22575960 chr19:54968013-54968014(+) Cm CDS       - chr19:54968977-54968978(+) m6A CDS       22575960 chr19:54969154-54969155(+) m6A CDS       22575960 chr19:54969339-54969340(+) m6A CDS       22575960 chr19:54969569-54969570(+) m6A CDS       24284625 chr19:54969648-54969649(+) m6A CDS       24284625 chr19:54969657-54969658(+) Cm CDS       - chr19:54969766-54969767(+) m6A CDS//intron       24284625//24981863 chr19:54970000-54970001(+) m6A CDS//intron       24284625 chr19:54970863-54970864(+) m6A 3'UTR//intron       22575960 chr19:54970886-54970887(+) m6A 3'UTR//intron       24981863//22575960 chr19:54971260-54971261(+) m6A 3'UTR//intron       - chr19:54971335-54971336(+) m6A 3'UTR//intron       - chr19:54971426-54971427(+) m6A 3'UTR//intron       - chr19:54971750-54971751(+) m6A 3'UTR//intron       - chr19:54972055-54972056(+) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//22575960//22608085 chr19:54972185-54972186(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960//22608085 chr19:54972494-54972495(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//22575960 chr19:54972579-54972580(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:54972636-54972637(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:54972716-54972717(+) m6A 3'UTR//intron       24284625//24209618//24981863//22575960//22608085 chr19:54973038-54973039(+) m6A 3'UTR       24284625//25456834//24981863//27773536//22608085 chr19:54973046-54973047(+) m6A 3'UTR       24284625//25456834//24981863//27773536//22608085 chr19:54973169-54973170(+) m6A 3'UTR       24284625//25456834//24981863//27773536//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LENG8	Chromatin K562 cells     - Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: LENG8

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg