Basic Information:

  VIRBase ID:  

VHID00207441

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          TMEM54:  NM_033504     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	TMEM54
miRBase Accession/Entrez ID	MIMAT0015650	113452
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BCLP//CAC-1//CAC1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM54	chr1:33365239(-) A-I      intronic chr1:33365223(-) A-I      intronic chr1:33365258(-) A-I      intronic chr1:33365256(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM54	chr1:33360206-33360207(-) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:33360232-33360233(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27773536 chr1:33360290-33360291(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27773536 chr1:33360300-33360301(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27773536 chr1:33360354-33360355(-) Y 3'UTR//exon       26075521 chr1:33360368-33360369(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27773536 chr1:33360469-33360470(-) m6A CDS//exon       - chr1:33361203-33361204(-) m6A CDS//exon       27773535 chr1:33361337-33361338(-) m6A CDS//exon//intron       27773535 chr1:33363878-33363879(-) m6A CDS//exon       27773536 chr1:33366855-33366856(-) m6A 5'UTR//exon       24209618//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM54	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: TMEM54

Evidence Support:

Prediction-Evidence	PITA//RNAHybrid
Support Database	VmiReg