Basic Information:

  VIRBase ID:  

VHID00206920

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          WNT5B:  NM_030775     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	WNT5B
miRBase Accession/Entrez ID	MIMAT0015650	81029
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	WNT5B	chr12:1750317(+) A-I      intronic chr12:1746096(+) A-I      intronic chr12:1745999(+) A-I      intronic chr12:1735860(+) A-I      intronic chr12:1734975(+) A-I      intronic chr12:1726675(+) A-I      intronic chr12:1726685(+) A-I      intronic chr12:1727067(+) A-I      intronic chr12:1734969(+) A-I      intronic chr12:1734880(+) A-I      intronic chr12:1733519(+) A-I      intronic chr12:1732568(+) A-I      intronic chr12:1732546(+) A-I      intronic chr12:1730972(+) A-I      intronic chr12:1732527(+) A-I      intronic chr12:1732425(+) A-I      intronic chr12:1730973(+) A-I      intronic chr12:1747267(+) A-I      intronic chr12:1730780(+) A-I      intronic chr12:1695555(+) A-I      intronic chr12:1729805(+) A-I      intronic chr12:1730785(+) A-I      intronic chr12:1746154(+) A-I      intronic chr12:1695431(+) A-I      intronic chr12:1726537(+) A-I      intronic chr12:1730825(+) A-I      intronic chr12:1746164(+) A-I      intronic chr12:1695435(+) A-I      intronic chr12:1729970(+) A-I      intronic chr12:1726591(+) A-I      intronic chr12:1745933(+) A-I      intronic chr12:1733402(+) A-I      intronic chr12:1733431(+) A-I      intronic chr12:1746175(+) A-I      intronic chr12:1726599(+) A-I      intronic chr12:1747293(+) A-I      intronic chr12:1695608(+) A-I      intronic chr12:1733492(+) A-I      intronic chr12:1747277(+) A-I      intronic chr12:1746084(+) A-I      intronic chr12:1733289(+) A-I      intronic chr12:1726808(+) A-I      intronic chr12:1746083(+) A-I      intronic chr12:1746148(+) A-I      intronic chr12:1746136(+) A-I      intronic chr12:1730841(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	WNT5B	chr12:1729805(+) A-G intron -    22484847 chr12:1729970(+) A-G intron -    22484847 chr12:1730785(+) A-G intron -    22484847 chr12:1730841(+) A-G intron -    22484847 chr12:1733402(+) A-G intron -    22484847 chr12:1733431(+) A-G intron -    22484847 chr12:1746083(+) A-G intron -    22484847 chr12:1746084(+) A-G intron -    22484847 chr12:1746154(+) A-G intron -    22484847 chr12:1747267(+) A-G intron -    22484847 chr12:1747277(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	WNT5B	chr12:1742035-1742036(+) m6A CDS//exon       24209618 chr12:1748860-1748861(+) m6A CDS//intron       24209618 chr12:1748972-1748973(+) m6A CDS//intron       25456834//24981863 chr12:1748984-1748985(+) m6A CDS//intron       25456834//24981863 chr12:1749008-1749009(+) m6A CDS//intron       25456834//24981863 chr12:1749071-1749072(+) m6A CDS//intron       24981863 chr12:1749113-1749114(+) m6A CDS//intron       24981863 chr12:1749122-1749123(+) m6A CDS//intron       24981863 chr12:1755065-1755066(+) m6A 3'UTR//CDS//exon       - chr12:1755167-1755168(+) m6A CDS//exon       25456834//24981863//22608085 chr12:1755182-1755183(+) m6A CDS//exon       25456834//24981863//22608085 chr12:1755256-1755257(+) m6A CDS//exon       25456834//24981863//22608085 chr12:1755398-1755399(+) m6A CDS//exon       - chr12:1755595-1755596(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr12:1755629-1755630(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085 chr12:1755658-1755659(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085 chr12:1755675-1755676(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085 chr12:1755782-1755783(+) m6A 3'UTR       24209618//25456834//24981863 chr12:1755834-1755835(+) m6A 3'UTR       24981863 chr12:1756032-1756033(+) m6A 3'UTR       24981863//22608085 chr12:1756140-1756141(+) m6A 3'UTR       24981863//22608085 chr12:1756277-1756278(+) m6A 3'UTR       24209618//24981863//22608085 chr12:1756403-1756404(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	WNT5B	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: WNT5B

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg