Basic Information:

  VIRBase ID:  

VHID00206373

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          NLGN2:  NM_020795     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	NLGN2
miRBase Accession/Entrez ID	MIMAT0015650	57555
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NLGN2	chr17:7317180(+) A-I      intronic chr17:7322486(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NLGN2	chr17:7308384-7308385(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr17:7308415-7308416(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr17:7308544-7308545(+) m6A 5'UTR       24284625//24209618//24981863 chr17:7308585-7308586(+) m6A 5'UTR       24284625//24209618 chr17:7308619-7308620(+) m6A 5'UTR       24284625//24209618 chr17:7311399-7311400(+) m6A 5'UTR//intron       24209618 chr17:7311707-7311708(+) m6A CDS//intron       24209618 chr17:7318391-7318392(+) m6A CDS       24284625 chr17:7318445-7318446(+) m6A CDS       24284625 chr17:7318969-7318970(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr17:7319035-7319036(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:7319079-7319080(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:7319101-7319102(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:7319116-7319117(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:7319139-7319140(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:7319300-7319301(+) m6A CDS       24284625//24209618//24981863//22608085 chr17:7319307-7319308(+) Y CDS       26075521 chr17:7319406-7319407(+) m6A CDS       24284625//24209618//24981863 chr17:7319421-7319422(+) m6A CDS       24284625//24209618 chr17:7320246-7320247(+) m6A CDS       24284625//24209618 chr17:7320612-7320613(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:7320621-7320622(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:7320714-7320715(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:7320876-7320877(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr17:7321185-7321186(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:7321246-7321247(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:7321323-7321324(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:7321356-7321357(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:7321467-7321468(+) m6A 3'UTR       24284625//24209618//24981863 chr17:7321569-7321570(+) m6A 3'UTR       24284625//24209618 chr17:7321614-7321615(+) m6A 3'UTR       24284625//24209618 chr17:7321775-7321776(+) m6A 3'UTR       24284625 chr17:7321876-7321877(+) m6A 3'UTR       24284625 chr17:7322001-7322002(+) m6A 3'UTR       24284625 chr17:7322032-7322033(+) m6A 3'UTR       24284625//24981863 chr17:7322146-7322147(+) m6A 3'UTR       24284625 chr17:7322190-7322191(+) m6A 3'UTR       24284625 chr17:7322217-7322218(+) m6A 3'UTR       24284625 chr17:7322266-7322267(+) m6A 3'UTR       24284625 chr17:7322423-7322424(+) m6A 3'UTR       24981863 chr17:7322534-7322535(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:7322569-7322570(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:7322591-7322592(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:7322606-7322607(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:7322704-7322705(+) m6A 3'UTR       - chr17:7322763-7322764(+) m6A 3'UTR       - chr17:7322835-7322836(+) m6A 3'UTR       24284625 chr17:7322932-7322933(+) m6A 3'UTR       24284625 chr17:7322958-7322959(+) m6A 3'UTR       24284625 chr17:7322971-7322972(+) m6A 3'UTR       24284625//24981863 chr17:7322980-7322981(+) m6A 3'UTR       24284625//24981863 chr17:7323022-7323023(+) m6A 3'UTR       24284625//24981863 chr17:7323042-7323043(+) m6A 3'UTR       24284625//24981863 chr17:7323070-7323071(+) m6A 3'UTR       24284625//24981863 chr17:7323130-7323131(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NLGN2	Chromatin K562 cells     - Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: NLGN2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg