Basic Information:

  VIRBase ID:  

VHID00206332

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          REXO1:  NM_020695     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	REXO1
miRBase Accession/Entrez ID	MIMAT0015650	57455
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EloA-BP1//ELOABP1//REX1//TCEB3BP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	REXO1	chr19:1830263(-) A-I      intronic chr19:1824965(-) A-I      intronic chr19:1829276(-) A-I      intronic chr19:1835362(-) A-I      intronic chr19:1835359(-) A-I      intronic chr19:1834649(-) A-I      intronic chr19:1824923(-) A-I      intronic chr19:1824896(-) A-I      intronic chr19:1845644(-) A-I      intronic chr19:1838950(-) A-I      intronic chr19:1825643(-) A-I      intronic chr19:1825295(-) A-I      intronic chr19:1825236(-) A-I      intronic chr19:1825159(-) A-I      intronic chr19:1825085(-) A-I      intronic chr19:1835379(-) A-I      intronic chr19:1825670(-) A-I      intronic chr19:1825688(-) A-I      intronic chr19:1829408(-) A-I      intronic chr19:1830293(-) A-I      intronic chr19:1830305(-) A-I      intronic chr19:1834482(-) A-I      intronic chr19:1834497(-) A-I      intronic chr19:1834498(-) A-I      intronic chr19:1835465(-) A-I      intronic chr19:1825177(-) A-I      intronic chr19:1834644(-) A-I      intronic chr19:1825116(-) A-I      intronic chr19:1829292(-) A-I      intronic chr19:1825421(-) A-I      intronic chr19:1829298(-) A-I      intronic chr19:1829349(-) A-I      intronic chr19:1825187(-) A-I      intronic chr19:1830396(-) A-I      intronic chr19:1829305(-) A-I      intronic chr19:1825142(-) A-I      intronic chr19:1829768(-) A-I      intronic chr19:1824981(-) A-I      intronic chr19:1825277(-) A-I      intronic chr19:1824949(-) A-I      intronic chr19:1830292(-) A-I      intronic chr19:1825136(-) A-I      intronic chr19:1825613(-) A-I      intronic chr19:1829310(-) A-I      intronic chr19:1825161(-) A-I      intronic chr19:1829375(-) A-I      intronic chr19:1829353(-) A-I      intronic chr19:1830413(-) A-I      intronic chr19:1830359(-) A-I      intronic chr19:1825639(-) A-I      intronic chr19:1825133(-) A-I      intronic chr19:1829411(-) A-I      intronic chr19:1829407(-) A-I      intronic chr19:1838446(-) A-I      intronic chr19:1825212(-) A-I      intronic chr19:1825598(-) A-I      intronic chr19:1829366(-) A-I      intronic chr19:1825151(-) A-I      intronic chr19:1824861(-) A-I      intronic chr19:1825668(-) A-I      intronic chr19:1824820(-) A-I      intronic chr19:1830477(-) A-I      intronic chr19:1829402(-) A-I      intronic chr19:1825217(-) A-I      intronic chr19:1829285(-) A-I      intronic chr19:1824989(-) A-I      intronic chr19:1829659(-) A-I      intronic chr19:1829460(-) A-I      intronic chr19:1833129(-) A-I      intronic chr19:1824815(-) A-I      intronic chr19:1830298(-) A-I      intronic chr19:1830238(-) A-I      intronic chr19:1834611(-) A-I      intronic chr19:1836479(-) A-I      intronic chr19:1825045(-) A-I      intronic chr19:1825180(-) A-I      intronic chr19:1829695(-) A-I      intronic chr19:1830307(-) A-I      intronic chr19:1838471(-) A-I      intronic chr19:1829376(-) A-I      intronic chr19:1824917(-) A-I      intronic chr19:1825199(-) A-I      intronic chr19:1825190(-) A-I      intronic chr19:1825748(-) A-I      intronic chr19:1825590(-) A-I      intronic chr19:1825747(-) A-I      intronic chr19:1829478(-) A-I      intronic chr19:1829859(-) A-I      intronic chr19:1829915(-) A-I      intronic chr19:1824979(-) A-I      intronic chr19:1829306(-) A-I      intronic chr19:1820967(-) A-I      intronic chr19:1825422(-) A-I      intronic chr19:1825384(-) A-I      intronic chr19:1825435(-) A-I      intronic chr19:1834615(-) A-I      intronic chr19:1829551(-) A-I      intronic chr19:1824980(-) A-I      intronic chr19:1824881(-) A-I      intronic chr19:1834593(-) A-I      intronic chr19:1845445(-) A-I      intronic chr19:1834583(-) A-I      intronic chr19:1825610(-) A-I      intronic chr19:1838136(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	REXO1	chr19:1829292(-) A-I intron -    22028664 chr19:1829298(-) A-I intron -    22028664 chr19:1829306(-) A-I intron -    22028664 chr19:1829310(-) A-I intron -    22028664 chr19:1829349(-) A-I intron -    22028664 chr19:1829353(-) A-I intron -    22028664 chr19:1829370(-) A-I intron -    22028664 chr19:1829375(-) A-I intron -    22028664 chr19:1829376(-) A-I intron -    22028664 chr19:1829402(-) A-I intron -    22028664 chr19:1829407(-) A-I intron -    22028664 chr19:1829411(-) A-I intron -    22028664 chr19:1824819(-) A-G intron -    22484847 chr19:1824853(-) A-G intron -    22484847 chr19:1825133(-) A-G intron -    22484847 chr19:1825136(-) A-G intron -    22484847 chr19:1825199(-) A-G intron -    22484847 chr19:1825319(-) T-G intron -    22484847 chr19:1825421(-) A-G intron -    22484847 chr19:1825598(-) A-G intron -    22484847 chr19:1825613(-) A-G intron -    22484847 chr19:1825639(-) A-G intron -    22484847 chr19:1825668(-) A-G intron -    22484847 chr19:1825726(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	REXO1	chr19:1815272-1815273(-) m6A 3'UTR       - chr19:1815301-1815302(-) m6A 3'UTR       - chr19:1815349-1815350(-) m6A 3'UTR       24284625//24981863 chr19:1815411-1815412(-) m6A 3'UTR       24284625 chr19:1815503-1815504(-) m6A 3'UTR       - chr19:1815805-1815806(-) m6A 3'UTR       25456834//24981863//27371828 chr19:1815811-1815812(-) m6A 3'UTR       25456834//24981863//27371828 chr19:1815827-1815828(-) m6A 3'UTR       25456834//24981863//27371828 chr19:1815996-1815997(-) m6A 3'UTR       24284625//27773535 chr19:1816075-1816076(-) m6A 3'UTR//CDS//exon       24284625//27773535//27371828 chr19:1816228-1816229(-) m6A 3'UTR//CDS//exon       - chr19:1816242-1816243(-) m6A 3'UTR//CDS//exon       - chr19:1816264-1816265(-) m6A 3'UTR//CDS//exon       - chr19:1816321-1816322(-) m6A 3'UTR//CDS//exon       - chr19:1816388-1816389(-) m6A exon//intron       24284625 chr19:1818582-1818583(-) m6A 3'UTR//CDS       24284625 chr19:1818706-1818707(-) m6A 3'UTR//CDS       24284625 chr19:1819985-1819986(-) m6A 3'UTR//CDS       27773535 chr19:1820009-1820010(-) m6A 3'UTR//CDS       27773535 chr19:1820382-1820383(-) m6A CDS       24284625//24981863//27773535 chr19:1821567-1821568(-) m6A CDS       24284625//24981863//27773535//27371828 chr19:1821597-1821598(-) m6A CDS       24284625//24981863//27773535//27371828//27773536 chr19:1821660-1821661(-) m6A CDS       24284625//27773535//27371828//27773536 chr19:1826898-1826899(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr19:1826967-1826968(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr19:1826994-1826995(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr19:1827123-1827124(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:1827135-1827136(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:1827141-1827142(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:1827396-1827397(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:1827481-1827482(-) m1A CDS       26863196 chr19:1827490-1827491(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085 chr19:1827546-1827547(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:1827585-1827586(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:1827592-1827593(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:1827597-1827598(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:1827646-1827647(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr19:1827662-1827663(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr19:1827744-1827745(-) m6A CDS//exon       24284625//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:1827778-1827779(-) m6A CDS//exon       24284625//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:1827924-1827925(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828//27773536//22575960//22608085 chr19:1828095-1828096(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:1828116-1828117(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:1828230-1828231(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:1830749-1830750(-) m6A exon//intron       27773536 chr19:1848359-1848360(-) m6A 5'UTR//exon       24209618//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	REXO1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: REXO1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg