Basic Information:

  VIRBase ID:  

VHID00206083

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          TMCO6:  NM_001300980     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	TMCO6
miRBase Accession/Entrez ID	MIMAT0015650	55374
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PRO1580

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMCO6	chr5:140019430-140019431(+) m6A 3'UTR//5'UTR//CDS//exon       - chr5:140021192-140021193(+) m6A exon//intron       - chr5:140021199-140021200(+) m6A exon//intron       - chr5:140021214-140021215(+) m6A exon//intron       - chr5:140021242-140021243(+) m6A exon//intron       - chr5:140021282-140021283(+) m6A 3'UTR//5'UTR//CDS//exon       - chr5:140021345-140021346(+) m6A 3'UTR//5'UTR//CDS//exon       - chr5:140021354-140021355(+) m6A 3'UTR//5'UTR//CDS//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMCO6	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: TMCO6

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg