Basic Information:

  VIRBase ID:  

VHID00205855

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          RHOF:  NM_019034     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	RHOF
miRBase Accession/Entrez ID	MIMAT0015650	54509
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARHF//RIF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RHOF	chr12:122224892(-) A-I      intronic chr12:122221783(-) A-I      intronic chr12:122221324(-) A-I      intronic chr12:122223641(-) A-I      intronic chr12:122225896(-) A-I      intronic chr12:122222351(-) A-I      intronic chr12:122224796(-) A-I      intronic chr12:122223628(-) A-I      intronic chr12:122224698(-) A-I      intronic chr12:122221526(-) A-I      intronic chr12:122224822(-) A-I      intronic chr12:122221805(-) A-I      intronic chr12:122229108(-) A-I      intronic chr12:122222365(-) A-I      intronic chr12:122224844(-) A-I      intronic chr12:122224858(-) A-I      intronic chr12:122229143(-) A-I      intronic chr12:122221729(-) A-I      intronic chr12:122221737(-) A-I      intronic chr12:122224942(-) A-I      intronic chr12:122222323(-) A-I      intronic chr12:122221317(-) A-I      intronic chr12:122224940(-) A-I      intronic chr12:122220859(-) A-I      intronic chr12:122222246(-) A-I      intronic chr12:122224700(-) A-I      intronic chr12:122216343(-) A-I      3'UTR chr12:122223918(-) A-I      intronic chr12:122221785(-) A-I      intronic chr12:122225789(-) A-I      intronic chr12:122223645(-) A-I      intronic chr12:122228920(-) A-I      intronic chr12:122229011(-) A-I      intronic chr12:122223690(-) A-I      intronic chr12:122223683(-) A-I      intronic chr12:122229026(-) A-I      intronic chr12:122222248(-) A-I      intronic chr12:122224777(-) A-I      intronic chr12:122221661(-) A-I      intronic chr12:122222329(-) A-I      intronic chr12:122225915(-) A-I      intronic chr12:122224938(-) A-I      intronic chr12:122223625(-) A-I      intronic chr12:122225833(-) A-I      intronic chr12:122227130(-) A-I      intronic chr12:122227095(-) A-I      intronic chr12:122224771(-) A-I      intronic chr12:122225708(-) A-I      intronic chr12:122221398(-) A-I      intronic chr12:122229196(-) A-I      intronic chr12:122216294(-) A-I      3'UTR chr12:122216274(-) A-I      3'UTR chr12:122216245(-) A-I      3'UTR chr12:122216235(-) A-I      3'UTR chr12:122216257(-) A-I      3'UTR chr12:122216275(-) A-I      3'UTR chr12:122216326(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RHOF	chr12:122222329(-) A-G intron -    22484847 chr12:122225636(-) A-G intron -    22484847 chr12:122225642(-) A-G intron -    22484847 chr12:122225696(-) A-G intron -    22484847 chr12:122225700(-) A-G intron -    22484847 chr12:122225708(-) A-G intron -    22484847 chr12:122229011(-) A-G intron -    22484847 chr12:122229026(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RHOF	chr12:122215843-122215844(-) m6A 3'UTR       24284625 chr12:122215891-122215892(-) m6A 3'UTR       24284625//27773535 chr12:122216062-122216063(-) m6A 3'UTR       24284625 chr12:122216071-122216072(-) m6A 3'UTR       24284625 chr12:122216151-122216152(-) m6A 3'UTR       24209618 chr12:122216186-122216187(-) m6A 3'UTR       24209618 chr12:122216237-122216238(-) m6A 3'UTR       24209618 chr12:122216352-122216353(-) m6A 3'UTR       27371828 chr12:122216453-122216454(-) m6A 3'UTR       24284625//24981863//27371828//22575960 chr12:122216465-122216466(-) m6A 3'UTR       24284625//24981863//27371828//22575960 chr12:122216478-122216479(-) m6A 3'UTR       24284625//24981863//27371828//22575960 chr12:122216509-122216510(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22575960 chr12:122216530-122216531(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22575960 chr12:122216612-122216613(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960 chr12:122216617-122216618(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960 chr12:122216640-122216641(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960 chr12:122216681-122216682(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960 chr12:122216697-122216698(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960 chr12:122216751-122216752(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960 chr12:122216847-122216848(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960 chr12:122216899-122216900(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960 chr12:122216937-122216938(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960 chr12:122217053-122217054(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr12:122217105-122217106(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr12:122217160-122217161(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr12:122217204-122217205(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr12:122217228-122217229(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr12:122217263-122217264(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr12:122217273-122217274(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr12:122217282-122217283(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr12:122217388-122217389(-) m6A 3'UTR       - chr12:122217392-122217393(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr12:122217550-122217551(-) m6A CDS       24284625//25456834//27371828 chr12:122218537-122218538(-) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr12:122218584-122218585(-) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr12:122218621-122218622(-) m6A 3'UTR//intron       24284625//24981863 chr12:122218724-122218725(-) m6A 3'UTR//intron       24284625//25456834//24981863//27371828 chr12:122218760-122218761(-) m6A CDS//intron       24284625//25456834//24981863//27371828 chr12:122218835-122218836(-) m6A CDS       24284625//22575960 chr12:122218851-122218852(-) m6A CDS       24284625//22575960 chr12:122219055-122219056(-) m6A 5'UTR//CDS       24284625//27773535 chr12:122219088-122219089(-) m6A 5'UTR//CDS       24284625//27773535 chr12:122230421-122230422(-) Gm intron       - chr12:122231074-122231075(-) m6A 5'UTR//CDS//exon       24284625//27773535 chr12:122231169-122231170(-) m6A 5'UTR//intron       24284625 chr12:122231197-122231198(-) m6A 5'UTR//intron       24284625 chr12:122231215-122231216(-) m6A 5'UTR//intron       24284625 chr12:122231442-122231443(-) m6A CDS//intron       24284625//24981863//27371828 chr12:122231511-122231512(-) m6A CDS//intron       24284625//24981863//27371828 chr12:122231686-122231687(-) m6A 5'UTR//intron       25456834//24981863 chr12:122231703-122231704(-) m6A 5'UTR//intron       25456834//24981863 chr12:122231736-122231737(-) m6A 5'UTR//intron       25456834//24981863 chr12:122233234-122233235(-) m6A intron       24284625 chr12:122240541-122240542(-) m6A 5'UTR//intron       27773535 chr12:122240656-122240657(-) m6A 5'UTR//intron       24284625//24981863//27773535//27371828//22608085 chr12:122240666-122240667(-) m6A 5'UTR//intron       24284625//24981863//27773535//27371828//22608085 chr12:122240681-122240682(-) m6A 5'UTR//intron       24284625//24981863//27773535//27371828//22608085 chr12:122240845-122240846(-) m6A exon       24284625//24981863//27773535//27371828//22608085 chr12:122240859-122240860(-) m6A exon       24284625//24981863//27773535//27371828//22608085 chr12:122241246-122241247(-) m6A exon       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RHOF	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: RHOF

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg