Basic Information:

  VIRBase ID:  

VHID00205674

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          RMDN1:  NM_016033     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	RMDN1
miRBase Accession/Entrez ID	MIMAT0015650	51115
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CGI-90//FAM82B//RMD-1//RMD1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RMDN1	chr8:87501929(-) A-I      intronic chr8:87489209(-) A-I      intronic chr8:87501947(-) A-I      intronic chr8:87501951(-) A-I      intronic chr8:87501976(-) A-I      intronic chr8:87501977(-) A-I      intronic chr8:87502053(-) A-I      intronic chr8:87525544(-) A-I      intronic chr8:87485792(-) A-I      3'UTR chr8:87485791(-) A-I      3'UTR chr8:87485948(-) A-I      3'UTR chr8:87485857(-) A-I      3'UTR chr8:87485876(-) A-I      3'UTR chr8:87485913(-) A-I      3'UTR chr8:87485886(-) A-I      3'UTR chr8:87485895(-) A-I      3'UTR chr8:87485912(-) A-I      3'UTR chr8:87489063(-) A-I      intronic chr8:87510297(-) A-I      intronic chr8:87485951(-) A-I      3'UTR chr8:87485863(-) A-I      3'UTR chr8:87486002(-) A-I      3'UTR chr8:87485812(-) A-I      3'UTR chr8:87485957(-) A-I      3'UTR chr8:87485790(-) A-I      3'UTR chr8:87485873(-) A-I      3'UTR chr8:87485981(-) A-I      3'UTR chr8:87485738(-) A-I      3'UTR chr8:87489000(-) A-I      intronic chr8:87489186(-) A-I      intronic chr8:87490227(-) A-I      intronic chr8:87489129(-) A-I      intronic chr8:87490255(-) A-I      intronic chr8:87514748(-) A-I      intronic chr8:87489003(-) A-I      intronic chr8:87489212(-) A-I      intronic chr8:87489211(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RMDN1	chr8:87485483-87485484(-) m6A 3'UTR//intron       24981863 chr8:87486461-87486462(-) m6A 3'UTR//exon//intron       27773535 chr8:87486474-87486475(-) m6A 3'UTR//exon//intron       27773535 chr8:87486499-87486500(-) m6A 3'UTR//exon//intron       27773535 chr8:87486533-87486534(-) m6A 3'UTR//exon//intron       27773535 chr8:87486580-87486581(-) m6A CDS//exon//intron       27773535 chr8:87486653-87486654(-) m6A 3'UTR//intron       27773535 chr8:87486667-87486668(-) m6A 3'UTR//intron       27773535 chr8:87486677-87486678(-) m6A 3'UTR//intron       27773535 chr8:87486715-87486716(-) m6A 3'UTR//intron       27773535 chr8:87487051-87487052(-) m6A CDS//exon//intron       27773535 chr8:87487079-87487080(-) m6A CDS//exon//intron       27773535 chr8:87487126-87487127(-) m6A CDS//exon//intron       27773535 chr8:87487137-87487138(-) m6A CDS//exon//intron       27773535 chr8:87487157-87487158(-) m6A CDS//exon//intron       27773535 chr8:87487172-87487173(-) m6A CDS//exon//intron       27773535 chr8:87487246-87487247(-) m6A exon//intron       27773535 chr8:87487255-87487256(-) m6A exon//intron       27773535 chr8:87489526-87489527(-) m6A CDS//exon       27773535 chr8:87494117-87494118(-) m6A intron       - chr8:87494218-87494219(-) m6A intron       24284625//27773535//22608085 chr8:87494231-87494232(-) m6A intron       24284625//27773535//22608085 chr8:87494246-87494247(-) m6A intron       24284625//27773535//22608085 chr8:87494251-87494252(-) m6A intron       24284625//27773535//22608085 chr8:87494279-87494280(-) m6A intron       27773535//22608085 chr8:87494668-87494669(-) m6A intron       27773535//22608085 chr8:87494815-87494816(-) m6A intron       22608085 chr8:87494945-87494946(-) m6A intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RMDN1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: RMDN1

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg