Basic Information:

  VIRBase ID:  

VHID00203942

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          STK11:  NM_000455     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	STK11
miRBase Accession/Entrez ID	MIMAT0015650	6794
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	hLKB1//LKB1//PJS

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	STK11	chr19:1216733(+) A-I      intronic chr19:1210852(+) A-I      intronic chr19:1210810(+) A-I      intronic chr19:1210767(+) A-I      intronic chr19:1215829(+) A-I      intronic chr19:1218075(+) A-I      intronic chr19:1218064(+) A-I      intronic chr19:1213203(+) A-I      intronic chr19:1213178(+) A-I      intronic chr19:1216728(+) A-I      intronic chr19:1216720(+) A-I      intronic chr19:1216408(+) A-I      intronic chr19:1217244(+) A-I      intronic chr19:1218088(+) A-I      intronic chr19:1215901(+) A-I      intronic chr19:1215836(+) A-I      intronic chr19:1218058(+) A-I      intronic chr19:1218039(+) A-I      intronic chr19:1216824(+) A-I      intronic chr19:1213060(+) A-I      intronic chr19:1217966(+) A-I      intronic chr19:1210740(+) A-I      intronic chr19:1217379(+) A-I      intronic chr19:1215853(+) A-I      intronic chr19:1216703(+) A-I      intronic chr19:1209533(+) A-I      intronic chr19:1209435(+) A-I      intronic chr19:1218130(+) A-I      intronic chr19:1217234(+) A-I      intronic chr19:1216707(+) A-I      intronic chr19:1218118(+) A-I      intronic chr19:1212471(+) A-I      intronic chr19:1213257(+) A-I      intronic chr19:1217985(+) A-I      intronic chr19:1217433(+) A-I      intronic chr19:1217996(+) A-I      intronic chr19:1217348(+) A-I      intronic chr19:1217332(+) A-I      intronic chr19:1216364(+) A-I      intronic chr19:1217271(+) A-I      intronic chr19:1216414(+) A-I      intronic chr19:1209493(+) A-I      intronic chr19:1216418(+) A-I      intronic chr19:1217356(+) A-I      intronic chr19:1208896(+) A-I      intronic chr19:1216752(+) A-I      intronic chr19:1216472(+) A-I      intronic chr19:1210750(+) A-I      intronic chr19:1210944(+) A-I      intronic chr19:1211176(+) A-I      intronic chr19:1210741(+) A-I      intronic chr19:1216641(+) A-I      intronic chr19:1216715(+) A-I      intronic chr19:1216706(+) A-I      intronic chr19:1216511(+) A-I      intronic chr19:1212408(+) A-I      intronic chr19:1217236(+) A-I      intronic chr19:1218028(+) A-I      intronic chr19:1217956(+) A-I      intronic chr19:1208802(+) A-I      intronic chr19:1216711(+) A-I      intronic chr19:1216423(+) A-I      intronic chr19:1209461(+) A-I      intronic chr19:1216756(+) A-I      intronic chr19:1217981(+) A-I      intronic chr19:1213270(+) A-I      intronic chr19:1216716(+) A-I      intronic chr19:1217256(+) A-I      intronic chr19:1215755(+) A-I      intronic chr19:1216746(+) A-I      intronic chr19:1210851(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	STK11	chr19:1216500(+) A-G intron -    22484847 chr19:1216511(+) A-G intron -    22484847 chr19:1216703(+) A-G intron -    22484847 chr19:1217382(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	STK11	chr19:1189633-1189634(+) m6A 5'UTR       - chr19:1205783-1205784(+) m6A intron       25456834//24981863 chr19:1205992-1205993(+) m6A 5'UTR//intron       24209618 chr19:1206367-1206368(+) m6A 5'UTR//intron       24209618//25456834//24981863//22608085 chr19:1206379-1206380(+) m6A 5'UTR//intron       24209618//25456834//24981863//22608085 chr19:1206458-1206459(+) m6A 5'UTR//intron       24209618//25456834//24981863//22608085 chr19:1206490-1206491(+) m6A 5'UTR//intron       24209618//25456834//24981863//22608085 chr19:1206646-1206647(+) m6A 5'UTR//intron       24209618//25456834//24981863//22608085 chr19:1206671-1206672(+) m6A 5'UTR//intron       24209618//25456834//24981863//22608085 chr19:1206696-1206697(+) m6A 5'UTR//intron       24209618//25456834//24981863//22608085 chr19:1206714-1206715(+) m6A 5'UTR//intron       24209618//25456834//24981863//22608085 chr19:1206727-1206728(+) m6A 5'UTR//intron       24209618//25456834//24981863//27773535//22608085 chr19:1206740-1206741(+) m6A 5'UTR//intron       24209618//25456834//24981863//27773535//22608085 chr19:1206844-1206845(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22575960//22608085 chr19:1206856-1206857(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22575960//22608085 chr19:1206871-1206872(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22575960//22608085 chr19:1206890-1206891(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22575960//22608085 chr19:1206898-1206899(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22575960//22608085 chr19:1206925-1206926(+) m6A CDS//exon//intron       24209618//25456834//24981863//26404942//22575960//22608085 chr19:1206979-1206980(+) m6A CDS//exon//intron       24209618//25456834//24981863//26404942//22608085 chr19:1207069-1207070(+) m6A CDS//exon//intron       24209618//25456834//24981863//26404942//22608085 chr19:1207114-1207115(+) m6A CDS//exon//intron       24209618//25456834//24981863//22608085 chr19:1207158-1207159(+) m1A CDS//exon//intron       26863410 chr19:1216379-1216380(+) m6A 3'UTR//intron       24209618 chr19:1220615-1220616(+) m6A CDS//exon       - chr19:1220667-1220668(+) m6A CDS//exon       - chr19:1221712-1221713(+) m6A exon//intron       - chr19:1221808-1221809(+) m6A exon//intron       24284625 chr19:1222998-1222999(+) m6A CDS//exon       - chr19:1223042-1223043(+) m6A CDS//exon       - chr19:1223051-1223052(+) m6A CDS//exon       - chr19:1223090-1223091(+) m6A CDS//exon       - chr19:1223117-1223118(+) m6A CDS//exon       24284625 chr19:1223156-1223157(+) m6A CDS//exon       24284625 chr19:1223702-1223703(+) m6A exon//intron       - chr19:1225808-1225809(+) m6A exon//intron       22575960 chr19:1225853-1225854(+) m6A exon//intron       - chr19:1225935-1225936(+) m6A exon//intron       25456834 chr19:1226453-1226454(+) m6A CDS//exon       - chr19:1226486-1226487(+) m6A CDS//exon       - chr19:1226698-1226699(+) m6A exon//intron       - chr19:1227233-1227234(+) m6A exon//intron       - chr19:1227546-1227547(+) m6A exon//intron       - chr19:1227705-1227706(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr19:1227739-1227740(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr19:1227748-1227749(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr19:1227876-1227877(+) m6A 3'UTR//exon       25456834 chr19:1227944-1227945(+) m6A 3'UTR//exon       - chr19:1228218-1228219(+) m6A 3'UTR       - chr19:1228255-1228256(+) m6A 3'UTR       - chr19:1228267-1228268(+) m6A 3'UTR       - chr19:1228321-1228322(+) m6A 3'UTR       24981863 chr19:1228363-1228364(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	STK11	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: STK11

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg