Basic Information:

  VIRBase ID:  

VHID00203770

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          RXRB:  NM_021976     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	RXRB
miRBase Accession/Entrez ID	MIMAT0015650	6257
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DAUDI6//H-2RIIBP//NR2B2//RCoR-1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RXRB	chr6:33161520-33161521(-) m6A 3'UTR       - chr6:33161616-33161617(-) m6A 3'UTR       24284625 chr6:33161802-33161803(-) m6A 3'UTR       24209618//24981863//27773535//22608085 chr6:33161814-33161815(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr6:33161851-33161852(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr6:33161906-33161907(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr6:33161995-33161996(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr6:33162034-33162035(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr6:33162081-33162082(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr6:33162141-33162142(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr6:33162260-33162261(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr6:33162279-33162280(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr6:33162319-33162320(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:33162325-33162326(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:33162332-33162333(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:33162362-33162363(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:33162403-33162404(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:33162451-33162452(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr6:33163468-33163469(-) m6A 3'UTR//CDS       27773535 chr6:33163578-33163579(-) m6A exon//intron       27773535 chr6:33164230-33164231(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr6:33164267-33164268(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr6:33164298-33164299(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr6:33164352-33164353(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr6:33165594-33165595(-) m6A 3'UTR//CDS//exon       24284625//24209618//27371828//27773536 chr6:33165609-33165610(-) m6A 3'UTR//CDS//exon       24284625//24209618//27371828//27773536 chr6:33165621-33165622(-) m6A 3'UTR//CDS//exon       24284625//24209618//27371828//27773536 chr6:33165630-33165631(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773536 chr6:33165651-33165652(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773536 chr6:33165713-33165714(-) m6A 3'UTR//CDS//exon       27773536 chr6:33166095-33166096(-) m6A 3'UTR//CDS//exon       27773536 chr6:33167177-33167178(-) m6A CDS//intron       24284625//24209618//25456834//27773535//27773536 chr6:33168075-33168076(-) m6A CDS       24209618//25456834//24981863//27773536 chr6:33168082-33168083(-) m6A CDS       24209618//25456834//24981863//27773536 chr6:33168286-33168287(-) m6A 5'UTR       24284625//25456834//24981863//22608085 chr6:33168445-33168446(-) m6A 5'UTR       24284625//25456834 chr6:33168457-33168458(-) m6A 5'UTR       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RXRB	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: RXRB

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg