Basic Information:

  VIRBase ID:  

VHID00203053

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          HOXB6:  NM_001369397     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	HOXB6
miRBase Accession/Entrez ID	MIMAT0015650	3216
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Hox-2.2//HOX2//HOX2B//HU-2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HOXB6	chr17:46673117-46673118(-) m6A 3'UTR       24981863//22608085 chr17:46673266-46673267(-) m6A 3'UTR       24284625//24981863//22608085 chr17:46673351-46673352(-) m6A 3'UTR       24284625//24981863//27773536//22575960//22608085 chr17:46673366-46673367(-) m6A 3'UTR       24284625//24981863//27773536//22575960//22608085 chr17:46673490-46673491(-) m6A 3'UTR       24284625//24981863//27773536//22575960//22608085 chr17:46673502-46673503(-) m6A 3'UTR       24284625//24981863//27773536//22575960//22608085 chr17:46673536-46673537(-) m6A 3'UTR       24284625//24981863//27773536//22575960//22608085 chr17:46673652-46673653(-) m6A 3'UTR       24284625//24981863//27773536//22608085 chr17:46673670-46673671(-) m6A 3'UTR       24284625//24981863//27773536//22608085 chr17:46673708-46673709(-) m6A 3'UTR       24284625//24981863//27773536//22608085 chr17:46673786-46673787(-) m6A CDS       24284625//24981863//27773536//22575960//22608085 chr17:46673831-46673832(-) m6A CDS       24284625//24981863//27773536//22575960//22608085 chr17:46673862-46673863(-) m6A CDS       24284625//24981863//27773536//22575960//22608085 chr17:46675160-46675161(-) m6A CDS       24284625//24981863//27773536 chr17:46675180-46675181(-) m6A CDS       24284625//24981863//27773536 chr17:46675192-46675193(-) m6A CDS       24284625//24981863//27773536 chr17:46675363-46675364(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:46675401-46675402(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:46675411-46675412(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:46675492-46675493(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:46675552-46675553(-) m6A 5'UTR       24284625//24209618//24981863//22575960//22608085 chr17:46675568-46675569(-) m6A 5'UTR       24284625//24209618//24981863//22575960//22608085 chr17:46675576-46675577(-) m6A 5'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr17:46675616-46675617(-) m6A 5'UTR//exon//intron       24284625//24209618//24981863//22575960//22608085 chr17:46681097-46681098(-) m6A exon//intron       24284625//24981863//22575960//22608085 chr17:46681180-46681181(-) m6A exon//intron       24284625 chr17:46681230-46681231(-) m6A exon//intron       24981863 chr17:46681268-46681269(-) m6A exon//intron       24981863 chr17:46681279-46681280(-) m6A exon//intron       24981863 chr17:46681914-46681915(-) m6A 5'UTR       24284625//24209618//24981863//22608085 chr17:46681942-46681943(-) m6A 5'UTR       24284625//24209618//24981863//22608085 chr17:46681993-46681994(-) m6A 5'UTR//intron       24284625//24209618//24981863//22575960//22608085 chr17:46682031-46682032(-) m6A 5'UTR//intron       24284625//24209618//24981863//22575960//22608085 chr17:46682063-46682064(-) m6A 5'UTR//intron       24284625//24981863//22575960//22608085 chr17:46682077-46682078(-) m6A 5'UTR//intron       24284625//24981863//22575960//22608085 chr17:46682151-46682152(-) m6A 5'UTR//intron       24284625//24981863//22608085 chr17:46682334-46682335(-) m6A 5'UTR       24284625//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HOXB6	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: HOXB6

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg