Basic Information:

  VIRBase ID:  

VHID00202589

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:  MIMAT0015650          COL8A2:  NM_001294347     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H5	COL8A2
miRBase Accession/Entrez ID	MIMAT0015650	1296
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FECD//FECD1//PPCD//PPCD2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	COL8A2	chr1:36571468(-) A-I      intronic chr1:36571315(-) A-I      intronic chr1:36568903(-) A-I      intronic chr1:36568069(-) A-I      intronic chr1:36568066(-) A-I      intronic chr1:36568050(-) A-I      intronic chr1:36569756(-) A-I      intronic chr1:36568774(-) A-I      intronic chr1:36567764(-) A-I      intronic chr1:36581570(-) A-I      intronic chr1:36567759(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	COL8A2	chr1:36561207-36561208(-) m6A 3'UTR       - chr1:36561281-36561282(-) m6A 3'UTR       24981863 chr1:36561406-36561407(-) m6A 3'UTR       24981863 chr1:36561414-36561415(-) m6A 3'UTR       24981863 chr1:36561425-36561426(-) m6A 3'UTR       24981863 chr1:36561550-36561551(-) m6A 3'UTR       25456834//24981863 chr1:36561714-36561715(-) m6A 3'UTR       25456834//24981863 chr1:36561812-36561813(-) m6A 3'UTR       25456834 chr1:36561894-36561895(-) m6A 3'UTR       25456834//24981863 chr1:36562298-36562299(-) m6A 3'UTR       - chr1:36562387-36562388(-) m6A 3'UTR       - chr1:36562489-36562490(-) m6A 3'UTR       25456834//27371828 chr1:36562598-36562599(-) m6A 3'UTR       25456834//24981863//27371828 chr1:36562631-36562632(-) m6A 3'UTR       25456834//24981863//27371828 chr1:36562644-36562645(-) m6A 3'UTR       25456834//24981863//27371828 chr1:36562666-36562667(-) m6A 3'UTR       25456834//24981863//27371828 chr1:36562705-36562706(-) m6A 3'UTR       25456834//24981863//27371828 chr1:36562712-36562713(-) m6A 3'UTR       25456834//24981863//27371828 chr1:36562733-36562734(-) m6A 3'UTR       25456834//24981863//27371828 chr1:36562831-36562832(-) m6A 3'UTR       25456834//27371828 chr1:36563038-36563039(-) m6A 3'UTR       25456834//24981863 chr1:36563069-36563070(-) m6A 3'UTR       25456834//24981863 chr1:36563080-36563081(-) m6A 3'UTR       25456834//24981863 chr1:36563097-36563098(-) m6A 3'UTR       25456834//24981863 chr1:36563242-36563243(-) m6A CDS       25456834 chr1:36563311-36563312(-) m6A CDS       25456834//24981863 chr1:36563362-36563363(-) m6A CDS       24981863 chr1:36563492-36563493(-) m6A CDS       24981863 chr1:36563666-36563667(-) m6A CDS       - chr1:36563697-36563698(-) m6A CDS//intron       - chr1:36563784-36563785(-) m6A CDS//intron       27371828 chr1:36563826-36563827(-) m6A CDS//intron       25456834//27371828 chr1:36563883-36563884(-) m6A CDS//intron       25456834//27371828 chr1:36563970-36563971(-) m6A CDS//intron       25456834//27371828 chr1:36564018-36564019(-) m6A CDS//intron       27371828 chr1:36564027-36564028(-) m6A CDS//intron       27371828 chr1:36564045-36564046(-) m6A CDS//intron       27371828 chr1:36564069-36564070(-) m6A CDS//intron       27371828 chr1:36564126-36564127(-) m6A CDS//intron       25456834//27371828 chr1:36564198-36564199(-) m6A CDS//intron       25456834//27371828 chr1:36564268-36564269(-) m6A CDS//intron       25456834//27371828 chr1:36564279-36564280(-) m6A CDS//intron       25456834//27371828 chr1:36564304-36564305(-) m6A CDS//intron       25456834//27371828 chr1:36564324-36564325(-) m6A CDS//intron       25456834 chr1:36564374-36564375(-) m6A CDS//intron       25456834 chr1:36564411-36564412(-) m6A CDS//intron       - chr1:36564462-36564463(-) m6A CDS//intron       - chr1:36564532-36564533(-) m6A CDS       - chr1:36564567-36564568(-) m6A CDS       - chr1:36564714-36564715(-) m6A CDS       - chr1:36564759-36564760(-) m6A CDS       - chr1:36564804-36564805(-) m6A CDS       - chr1:36564813-36564814(-) m6A CDS       - chr1:36564829-36564830(-) m6A CDS       - chr1:36564963-36564964(-) m6A CDS       - chr1:36564984-36564985(-) m6A CDS       - chr1:36565060-36565061(-) m6A CDS       - chr1:36565684-36565685(-) m6A CDS//intron       - chr1:36565693-36565694(-) m6A CDS//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	COL8A2	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H5
Interactor2: COL8A2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA
Support Database	RepTar//VmiReg