Detail Information

Basic Information:


  VIRBase ID:  

VHID00202565

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H5:           CLK2:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H5 CLK2
miRBase
Accession/Entrez ID		 MIMAT0015650 1196
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLK2
chr1:155237063(-) A-I      intronic
chr1:155235210(-) A-I      intronic
chr1:155237153(-) A-I      intronic
chr1:155237062(-) A-I      intronic
chr1:155237040(-) A-I      intronic
chr1:155237077(-) A-I      intronic
chr1:155235192(-) A-I      intronic
chr1:155237022(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLK2
chr1:155232851-155232852(-) m6A 3'UTR//exon       24284625//24981863//28052920//27773535//22608085
chr1:155232952-155232953(-) m6A 3'UTR//exon       24284625//24981863//28052920//27773535//22608085
chr1:155233033-155233034(-) m6A CDS//exon       24284625//24981863//27773535//22575960
chr1:155233119-155233120(-) m6A CDS//exon       24284625
chr1:155234090-155234091(-) m6A CDS//exon       27773535
chr1:155234188-155234189(-) m6A exon//intron       27773535
chr1:155235714-155235715(-) m6A CDS//exon       27773535
chr1:155236590-155236591(-) m6A CDS//exon       27773535
chr1:155237815-155237816(-) m6A CDS//exon       27773535
chr1:155238120-155238121(-) m6A CDS//exon       27773535
chr1:155238515-155238516(-) m6A CDS//exon//intron       -
chr1:155238786-155238787(-) m6A exon//intron       27773535
chr1:155239298-155239299(-) m6A CDS//exon       24209618//27773535
chr1:155239363-155239364(-) m6A CDS//exon       24209618//27773535
chr1:155239396-155239397(-) m6A CDS//exon       24209618//24981863//27773535//22575960
chr1:155240622-155240623(-) m6A CDS//exon       27773535//22575960
chr1:155240644-155240645(-) m6A CDS//exon       27773535//22575960
chr1:155240675-155240676(-) m1A CDS//exon       26863196
chr1:155240708-155240709(-) m6A CDS//exon       24209618//27773535//27371828//27773536//22575960
chr1:155243019-155243020(-) m6A 5'UTR//exon//intron       24284625//24209618//27371828//27773536//22575960
chr1:155243031-155243032(-) m6A 5'UTR//exon//intron       24284625//24209618//27371828//27773536//22575960
chr1:155243061-155243062(-) m6A 5'UTR//exon//intron       24284625//24209618//27371828//27773536//22575960
chr1:155243151-155243152(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//27773536
chr1:155243238-155243239(-) m6A 5'UTR//intron       25456834//27371828//27773536
chr1:155247485-155247486(-) m6A intron       25456834//24981863//22608085
chr1:155248182-155248183(-) m6A exon       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CLK2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H5
Interactor2: CLK2

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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